Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BPGQ101_RS08895 Genome accession   NZ_CP040514
Coordinates   1722873..1724123 (+) Length   416 a.a.
NCBI ID   WP_138278533.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1717873..1729123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS08870 (BPGQ101_08875) ymfI 1719285..1720013 (+) 729 WP_135008876.1 elongation factor P 5-aminopentanone reductase -
  BPGQ101_RS08875 (BPGQ101_08880) - 1720086..1720343 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  BPGQ101_RS08880 (BPGQ101_08885) - 1720475..1721266 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BPGQ101_RS08885 (BPGQ101_08890) - 1721290..1722201 (+) 912 WP_138278532.1 helix-turn-helix domain-containing protein -
  BPGQ101_RS08890 (BPGQ101_08895) pgsA 1722275..1722856 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BPGQ101_RS08895 (BPGQ101_08900) cinA 1722873..1724123 (+) 1251 WP_138278533.1 competence/damage-inducible protein A Machinery gene
  BPGQ101_RS08900 (BPGQ101_08905) recA 1724301..1725344 (+) 1044 WP_138278534.1 recombinase RecA Machinery gene
  BPGQ101_RS08905 (BPGQ101_08910) rny 1725645..1727207 (+) 1563 WP_003211958.1 ribonuclease Y -
  BPGQ101_RS08910 (BPGQ101_08915) - 1727297..1728091 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  BPGQ101_RS08915 (BPGQ101_08920) spoVS 1728294..1728554 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45583.76 Da        Isoelectric Point: 4.9806

>NTDB_id=364815 BPGQ101_RS08895 WP_138278533.1 1722873..1724123(+) (cinA) [Bacillus altitudinis strain GQYP101]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KVTEAQILERVGEYFYGYGNTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKDS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=364815 BPGQ101_RS08895 WP_138278533.1 1722873..1724123(+) (cinA) [Bacillus altitudinis strain GQYP101]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAGGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGTAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTAATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTTAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCCGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGGATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGATAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.396

99.519

0.74
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment