Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FED51_RS12110 Genome accession   NZ_CP040441
Coordinates   2508912..2509961 (-) Length   349 a.a.
NCBI ID   WP_010898536.1    Uniprot ID   -
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2503912..2514961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS12090 - 2505451..2506116 (-) 666 WP_010898532.1 ATPase -
  FED51_RS12095 - 2506109..2506459 (-) 351 WP_407901189.1 hypothetical protein -
  FED51_RS12100 - 2506392..2507804 (-) 1413 WP_053430983.1 AAA family ATPase -
  FED51_RS12105 - 2507791..2508789 (-) 999 WP_053430982.1 metallophosphoesterase family protein -
  FED51_RS12110 recA 2508912..2509961 (-) 1050 WP_010898536.1 recombinase RecA Machinery gene
  FED51_RS12115 - 2510152..2511771 (-) 1620 WP_407901190.1 DEAD/DEAH box helicase -
  FED51_RS12120 cinA 2511746..2513008 (-) 1263 WP_053430980.1 competence/damage-inducible protein A Machinery gene
  FED51_RS12125 pgsA 2513027..2513605 (-) 579 WP_010898539.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FED51_RS12130 - 2513642..2514136 (-) 495 WP_010898540.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37914.11 Da        Isoelectric Point: 4.8681

>NTDB_id=364484 FED51_RS12110 WP_010898536.1 2508912..2509961(-) (recA) [Halalkalibacterium halodurans isolate LB-1]
MSDRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTISSGALALDIALGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGRENAKQFLKENPEAAEEIESR
IREHYGLNGEIEVEAPSEEEFEDLPLDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=364484 FED51_RS12110 WP_010898536.1 2508912..2509961(-) (recA) [Halalkalibacterium halodurans isolate LB-1]
ATGAGTGATCGTAAAGCAGCGTTGGACATGGCGTTACGACAAATTGAAAAGCAATTCGGAAAAGGCTCGATCATGAAGCT
GGGAGAACAAGCAGAACAACGTGTATCTACCATTTCCAGCGGTGCTCTTGCCCTTGACATCGCCCTTGGTGTTGGCGGAT
ACCCTCGTGGAAGAGTTATTGAAGTGTATGGTCCAGAATCATCTGGTAAAACGACCGTTGCCCTCCATGCGATTGCAGAG
GTGCAAAGAAATGGTGGTCAAGCTGCGTTTATTGATGCGGAACATGCCCTTGATCCGGTTTATGCGAAAAAGCTAGGTGT
AAACATTGATGAGCTTTTATTGTCACAGCCTGATACCGGAGAACAAGCGTTGGAAATCGCTGAAGCGTTAGTTCGCAGCG
GGGCCATTGACGTCATTGTCATCGACAGTGTGGCAGCTCTTGTACCGAAAGCGGAAATAGAAGGGGAGATGGGTGACAGC
CATGTTGGCTTGCAAGCACGCCTAATGTCTCAAGCGCTTCGGAAGCTTTCAGGTGCGATCAATAAGTCAAAAACAATTGC
AATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGAAACCCGGAAACGACACCGGGGGGAAGAGCGCTTA
AGTTCTATTCCTCTGTTCGTCTCGAAGTGCGCCGTGCAGAGACGTTAAAGCAAGGAAACGATATGGTCGGTAACAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCTCCTCCGTTTAAACAAGCGGAAGTGGATATTATGTACGGTGAAGGGATTTC
CCGTGAAGGCTCGATTTTAGATATTGCTTCTGAGCTTGATATTGTGCAAAAAAGCGGAGCTTGGTATTCCTTCAATGACG
AGCGTCTCGGTCAAGGGCGCGAGAATGCGAAACAATTTTTAAAGGAAAACCCTGAAGCTGCGGAGGAAATTGAAAGCCGA
ATTCGCGAGCATTACGGTTTGAACGGAGAGATTGAGGTGGAGGCTCCATCGGAAGAGGAGTTTGAAGATCTCCCACTCGA
TTTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

93.983

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

70.893

99.427

0.705
  recA Streptococcus pneumoniae D39

66.575

100

0.691
  recA Streptococcus pneumoniae Rx1

66.575

100

0.691
  recA Streptococcus pneumoniae R6

66.575

100

0.691
  recA Streptococcus pneumoniae TIGR4

66.575

100

0.691
  recA Streptococcus pyogenes NZ131

67.989

100

0.688
  recA Streptococcus mitis NCTC 12261

68.805

98.281

0.676
  recA Streptococcus mitis SK321

68.805

98.281

0.676
  recA Streptococcus mutans UA159

70.213

94.269

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.857

96.275

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.431

98.281

0.633
  recA Neisseria gonorrhoeae MS11

64.431

98.281

0.633
  recA Neisseria gonorrhoeae MS11

64.431

98.281

0.633
  recA Acinetobacter baumannii D1279779

61.782

99.713

0.616
  recA Ralstonia pseudosolanacearum GMI1000

67.516

89.971

0.607
  recA Glaesserella parasuis strain SC1401

60.114

100

0.605
  recA Helicobacter pylori 26695

61.516

98.281

0.605
  recA Helicobacter pylori strain NCTC11637

61.516

98.281

0.605
  recA Vibrio cholerae strain A1552

65.732

91.977

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

91.977

0.605
  recA Acinetobacter baylyi ADP1

60.933

98.281

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.333

94.556

0.599
  recA Pseudomonas stutzeri DSM 10701

60.704

97.708

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.691

0.57

Multiple sequence alignment