Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FED51_RS12120 Genome accession   NZ_CP040441
Coordinates   2511746..2513008 (-) Length   420 a.a.
NCBI ID   WP_053430980.1    Uniprot ID   A0A0M0KIY1
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2506746..2518008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS12105 - 2507791..2508789 (-) 999 WP_053430982.1 metallophosphoesterase family protein -
  FED51_RS12110 recA 2508912..2509961 (-) 1050 WP_010898536.1 recombinase RecA Machinery gene
  FED51_RS12115 - 2510152..2511771 (-) 1620 WP_407901190.1 DEAD/DEAH box helicase -
  FED51_RS12120 cinA 2511746..2513008 (-) 1263 WP_053430980.1 competence/damage-inducible protein A Machinery gene
  FED51_RS12125 pgsA 2513027..2513605 (-) 579 WP_010898539.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FED51_RS12130 - 2513642..2514136 (-) 495 WP_010898540.1 YajQ family cyclic di-GMP-binding protein -
  FED51_RS12135 - 2514277..2515149 (-) 873 WP_053430979.1 helix-turn-helix domain-containing protein -
  FED51_RS12140 - 2515166..2515939 (-) 774 WP_010898542.1 DUF3388 domain-containing protein -
  FED51_RS12145 - 2516249..2516503 (-) 255 WP_010898543.1 DUF3243 domain-containing protein -
  FED51_RS12150 ymfI 2516600..2517328 (-) 729 WP_010898544.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46078.74 Da        Isoelectric Point: 5.8087

>NTDB_id=364485 FED51_RS12120 WP_053430980.1 2511746..2513008(-) (cinA) [Halalkalibacterium halodurans isolate LB-1]
MKAEVIAVGSELLLGQIANTNGQFLSQQLAKAGVDVFYHSVVGDNATRLQETLEIASKRSELIILTGGLGPTKDDLTKEV
VASFLHKELVIDEVALEQIVSFFEKRNLPMTENNRKQALVLKEATIFQNHYGMAPGMATIHQGVTYVLLPGPPREMRPMV
TEQVIPFLSSHVGDVQIISRVLRFFGIGESKLETELEDLIDGQSNPTIAPLASEGEVTLRLTVKHHDETQAALLLDETER
KIRERVGHYFYGYDETSLMEKLVSCLTKTGLSLASAESLTGGLFGARITNIPGASACFLAAITTYTNDMKQSWLNVPPHV
LEQHGAVSPECAIAMAQGVKKLTKADVTISFTGVAGPSPSEGKEPGTVFIGLCFRDDEPEAITLQLSGSREQIRERTLKH
GCQQILNRIKRWNERSNDKV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=364485 FED51_RS12120 WP_053430980.1 2511746..2513008(-) (cinA) [Halalkalibacterium halodurans isolate LB-1]
ATGAAAGCAGAAGTAATTGCTGTCGGTTCAGAACTGCTTTTAGGACAAATTGCGAATACAAATGGCCAATTCCTCTCGCA
GCAGCTAGCAAAAGCAGGGGTTGACGTTTTTTATCACTCTGTCGTTGGTGACAACGCGACAAGACTTCAGGAAACGCTTG
AAATCGCAAGTAAACGTTCCGAGTTGATCATCCTCACTGGGGGACTGGGGCCAACGAAGGATGATTTGACTAAAGAGGTT
GTGGCATCGTTTCTTCACAAAGAGCTTGTGATCGATGAAGTAGCCCTTGAGCAAATTGTTTCCTTTTTTGAGAAACGAAA
CTTGCCAATGACGGAAAACAATCGCAAACAAGCACTCGTCCTGAAAGAGGCTACTATTTTTCAAAATCATTATGGCATGG
CACCAGGTATGGCGACGATCCATCAAGGGGTCACCTATGTTCTTTTACCAGGTCCGCCACGGGAAATGAGACCGATGGTG
ACAGAGCAAGTCATTCCATTCTTAAGCAGCCATGTTGGCGATGTGCAAATTATTTCCCGCGTACTGCGCTTTTTTGGCAT
CGGAGAATCGAAGCTTGAGACCGAGCTAGAAGATCTCATAGATGGTCAATCGAACCCAACGATTGCTCCCCTTGCCAGCG
AAGGAGAAGTCACGTTAAGGTTAACAGTAAAGCATCATGATGAAACACAGGCAGCGCTGCTGTTAGATGAAACAGAGAGG
AAGATACGTGAGCGGGTCGGTCACTATTTTTATGGATATGACGAAACTTCTTTAATGGAAAAGCTCGTTTCGTGTTTAAC
GAAAACGGGGCTTTCGCTTGCTAGTGCAGAAAGCCTGACAGGAGGATTATTCGGCGCCAGAATAACAAATATTCCTGGGG
CATCTGCCTGTTTTCTTGCCGCGATAACCACATATACTAATGACATGAAGCAAAGTTGGCTAAACGTCCCTCCACACGTG
TTAGAACAGCACGGGGCAGTCAGCCCAGAATGTGCTATAGCGATGGCACAAGGAGTGAAAAAGCTAACAAAGGCCGATGT
GACGATCAGTTTTACAGGTGTAGCTGGACCGTCACCATCCGAAGGAAAAGAACCAGGTACGGTATTTATCGGTTTGTGCT
TCCGAGATGACGAGCCGGAAGCGATCACCCTTCAACTTTCTGGCAGCCGTGAACAGATTCGTGAGCGCACATTAAAGCAC
GGATGTCAGCAGATCTTGAACAGAATAAAAAGGTGGAATGAACGAAGCAATGATAAAGTTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(256-407)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0KIY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.258

97.857

0.531
  cinA Streptococcus mitis NCTC 12261

47.805

97.619

0.467
  cinA Streptococcus pneumoniae TIGR4

47.805

97.619

0.467
  cinA Streptococcus mitis SK321

47.561

97.619

0.464
  cinA Streptococcus pneumoniae Rx1

47.561

97.619

0.464
  cinA Streptococcus pneumoniae R6

47.561

97.619

0.464
  cinA Streptococcus pneumoniae D39

47.317

97.619

0.462
  cinA Streptococcus mutans UA159

47.044

96.667

0.455
  cinA Streptococcus suis isolate S10

41.081

88.095

0.362

Multiple sequence alignment