Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FEM46_RS09930 Genome accession   NZ_CP040374
Coordinates   2018769..2019911 (-) Length   380 a.a.
NCBI ID   WP_021356874.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum subsp. plantarum strain SKO-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2013769..2024911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEM46_RS09920 (FEM46_09920) - 2016048..2016854 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  FEM46_RS09925 (FEM46_09925) rny 2016979..2018538 (-) 1560 WP_003644638.1 ribonuclease Y -
  FEM46_RS09930 (FEM46_09930) recA 2018769..2019911 (-) 1143 WP_021356874.1 recombinase RecA Machinery gene
  FEM46_RS09935 (FEM46_09935) cinA 2020003..2021265 (-) 1263 WP_003641503.1 competence/damage-inducible protein A Machinery gene
  FEM46_RS09940 (FEM46_09940) pgsA 2021533..2022117 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FEM46_RS09945 (FEM46_09945) - 2022140..2023012 (-) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  FEM46_RS09950 (FEM46_09950) yfmH 2023116..2024417 (-) 1302 WP_021356875.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40650.99 Da        Isoelectric Point: 5.8604

>NTDB_id=363782 FEM46_RS09930 WP_021356874.1 2018769..2019911(-) (recA) [Lactiplantibacillus plantarum subsp. plantarum strain SKO-001]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKKAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTEK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=363782 FEM46_RS09930 WP_021356874.1 2018769..2019911(-) (recA) [Lactiplantibacillus plantarum subsp. plantarum strain SKO-001]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTGTTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTCTACGCCACGATTCGTTTGGAAGTACGGCGAGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCGTTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATGCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAAAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.412

89.474

0.755
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.368

0.653
  recA Streptococcus pneumoniae D39

64.987

99.211

0.645
  recA Streptococcus pneumoniae R6

64.987

99.211

0.645
  recA Streptococcus pneumoniae TIGR4

64.987

99.211

0.645
  recA Streptococcus pneumoniae Rx1

64.987

99.211

0.645
  recA Streptococcus mitis SK321

63.395

99.211

0.629
  recA Streptococcus mitis NCTC 12261

63.13

99.211

0.626
  recA Streptococcus mutans UA159

66.197

93.421

0.618
  recA Streptococcus pyogenes NZ131

66.289

92.895

0.616
  recA Lactococcus lactis subsp. cremoris KW2

69.207

86.316

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.337

90.526

0.555
  recA Neisseria gonorrhoeae MS11

60.819

90

0.547
  recA Neisseria gonorrhoeae MS11

60.819

90

0.547
  recA Neisseria gonorrhoeae strain FA1090

60.819

90

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.884

90.526

0.542
  recA Vibrio cholerae strain A1552

59.884

90.526

0.542
  recA Acinetobacter baylyi ADP1

59.13

90.789

0.537
  recA Pseudomonas stutzeri DSM 10701

62.539

85

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.526

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.235

89.474

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.316

0.518
  recA Acinetobacter baumannii D1279779

59.877

85.263

0.511
  recA Glaesserella parasuis strain SC1401

60.248

84.737

0.511
  recA Helicobacter pylori 26695

58.951

85.263

0.503
  recA Helicobacter pylori strain NCTC11637

58.951

85.263

0.503

Multiple sequence alignment