Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EUC40_RS08170 Genome accession   NZ_CP040336
Coordinates   1568141..1569172 (+) Length   343 a.a.
NCBI ID   WP_156574331.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1563141..1574172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS08140 - 1563199..1563912 (+) 714 WP_151624261.1 SDR family oxidoreductase -
  EUC40_RS08145 - 1563988..1564236 (+) 249 WP_000114504.1 DUF3243 domain-containing protein -
  EUC40_RS08150 - 1564375..1565160 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EUC40_RS08155 - 1565182..1566093 (+) 912 WP_071713254.1 helix-turn-helix domain-containing protein -
  EUC40_RS08160 pgsA 1566157..1566735 (+) 579 WP_071713255.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EUC40_RS08165 cinA 1566756..1567994 (+) 1239 WP_156574329.1 competence/damage-inducible protein CinA Machinery gene
  EUC40_RS08170 recA 1568141..1569172 (+) 1032 WP_156574331.1 recombinase RecA Machinery gene
  EUC40_RS08175 rny 1569654..1571219 (+) 1566 WP_016086643.1 ribonuclease Y -
  EUC40_RS08180 - 1571374..1572168 (+) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  EUC40_RS08185 spoVS 1572318..1572578 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EUC40_RS08190 - 1572601..1573560 (+) 960 WP_140163812.1 dipeptidase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37311.23 Da        Isoelectric Point: 4.9057

>NTDB_id=363350 EUC40_RS08170 WP_156574331.1 1568141..1569172(+) (recA) [Bacillus luti strain FJ]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VRDHHGIGEDSGVEDAEDSNLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=363350 EUC40_RS08170 WP_156574331.1 1568141..1569172(+) (recA) [Bacillus luti strain FJ]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCTGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCGATGGATCCTGTATATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGATATTATTGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATTAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTTCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAGAATAAAGTAGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AGCGTTTAGGGCAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGATCATCACGGAATTGGTGAAGACTCTGGTGTGGAAGACGCGGAAGATTCAAATCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.186

97.085

0.837
  recA Latilactobacillus sakei subsp. sakei 23K

76.453

95.335

0.729
  recA Streptococcus pneumoniae D39

68.222

100

0.682
  recA Streptococcus pneumoniae Rx1

68.222

100

0.682
  recA Streptococcus pneumoniae R6

68.222

100

0.682
  recA Streptococcus pneumoniae TIGR4

68.222

100

0.682
  recA Streptococcus pyogenes NZ131

70.427

95.627

0.673
  recA Streptococcus mutans UA159

67.742

99.417

0.673
  recA Streptococcus mitis SK321

69.697

96.21

0.671
  recA Streptococcus mitis NCTC 12261

69.697

96.21

0.671
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.959

0.662
  recA Ralstonia pseudosolanacearum GMI1000

66.667

94.461

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

98.251

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Glaesserella parasuis strain SC1401

61.243

98.542

0.604
  recA Acinetobacter baumannii D1279779

60.526

99.708

0.603
  recA Helicobacter pylori 26695

62.006

95.918

0.595
  recA Helicobacter pylori strain NCTC11637

62.006

95.918

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

95.335

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.273

90.671

0.592
  recA Vibrio cholerae strain A1552

65.273

90.671

0.592
  recA Acinetobacter baylyi ADP1

62.112

93.878

0.583
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.128

0.563

Multiple sequence alignment