Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EUC40_RS08165 Genome accession   NZ_CP040336
Coordinates   1566756..1567994 (+) Length   412 a.a.
NCBI ID   WP_156574329.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1561756..1572994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS08135 - 1561812..1563098 (+) 1287 WP_071713252.1 pitrilysin family protein -
  EUC40_RS08140 - 1563199..1563912 (+) 714 WP_151624261.1 SDR family oxidoreductase -
  EUC40_RS08145 - 1563988..1564236 (+) 249 WP_000114504.1 DUF3243 domain-containing protein -
  EUC40_RS08150 - 1564375..1565160 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EUC40_RS08155 - 1565182..1566093 (+) 912 WP_071713254.1 helix-turn-helix domain-containing protein -
  EUC40_RS08160 pgsA 1566157..1566735 (+) 579 WP_071713255.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EUC40_RS08165 cinA 1566756..1567994 (+) 1239 WP_156574329.1 competence/damage-inducible protein CinA Machinery gene
  EUC40_RS08170 recA 1568141..1569172 (+) 1032 WP_156574331.1 recombinase RecA Machinery gene
  EUC40_RS08175 rny 1569654..1571219 (+) 1566 WP_016086643.1 ribonuclease Y -
  EUC40_RS08180 - 1571374..1572168 (+) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  EUC40_RS08185 spoVS 1572318..1572578 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45631.92 Da        Isoelectric Point: 5.1274

>NTDB_id=363349 EUC40_RS08165 WP_156574329.1 1566756..1567994(+) (cinA) [Bacillus luti strain FJ]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDEKALASISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAEEAEKLIQRIED
LILERVGEFFYGYDQEFLHYKAIELLKKKELTLACAESLTGGLFGNQVTEISGVSSVFKGGVICYHNDVKQHVLHVPEEI
LHTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDTSEHKEPGTVFVGLAIKDEQTVVFSLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=363349 EUC40_RS08165 WP_156574329.1 1566756..1567994(+) (cinA) [Bacillus luti strain FJ]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCGGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGAGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTTGTTTTGAATGGAGCAACTGTATTTGCCAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTGTTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACGGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCAAAGCATCAAAATGCTGAGGAAGCGGAGAAACTCATTCAGCGTATAGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTCTCCATTATAAGGCAATAGAGTTATTGAA
GAAAAAAGAATTAACTTTAGCTTGTGCGGAAAGTTTAACAGGTGGTCTTTTCGGAAATCAAGTAACAGAAATTTCGGGTG
TATCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAGCATGTTTTGCATGTGCCTGAAGAAATA
TTGCATACGGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATACTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAGGATGAACAAACTGTAGTCTTTTCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.78

99.515

0.585
  cinA Streptococcus mitis SK321

47.733

100

0.485
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.478
  cinA Streptococcus pneumoniae R6

47.017

100

0.478
  cinA Streptococcus pneumoniae D39

46.778

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.778

100

0.476
  cinA Streptococcus mutans UA159

45.209

98.786

0.447
  cinA Streptococcus suis isolate S10

41.799

91.748

0.383

Multiple sequence alignment