Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FCN77_RS08255 Genome accession   NZ_CP040018
Coordinates   1797847..1798902 (+) Length   351 a.a.
NCBI ID   WP_055798340.1    Uniprot ID   A0A0Q5P0T0
Organism   Arthrobacter sp. 24S4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1792847..1803902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN77_RS08230 (FCN77_08230) pgsA 1795013..1795654 (+) 642 WP_137321876.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FCN77_RS08235 (FCN77_08235) - 1795651..1796145 (+) 495 WP_137321877.1 CinA family protein -
  FCN77_RS08240 (FCN77_08240) - 1796286..1796738 (+) 453 WP_137321878.1 helix-turn-helix domain-containing protein -
  FCN77_RS08245 (FCN77_08245) - 1796863..1797372 (-) 510 WP_137321879.1 MarR family winged helix-turn-helix transcriptional regulator -
  FCN77_RS08250 (FCN77_08250) - 1797441..1797638 (+) 198 WP_254678905.1 DUF3046 domain-containing protein -
  FCN77_RS08255 (FCN77_08255) recA 1797847..1798902 (+) 1056 WP_055798340.1 recombinase RecA Machinery gene
  FCN77_RS08260 (FCN77_08260) - 1799054..1799557 (+) 504 WP_137321881.1 regulatory protein RecX -
  FCN77_RS08265 (FCN77_08265) miaB 1799561..1801141 (+) 1581 WP_175417187.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FCN77_RS08270 (FCN77_08270) miaA 1801223..1802101 (+) 879 WP_254679004.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FCN77_RS08275 (FCN77_08275) dapF 1802178..1803121 (+) 944 Protein_1664 diaminopimelate epimerase -
  FCN77_RS08280 (FCN77_08280) - 1803102..1803716 (-) 615 WP_137321883.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37461.03 Da        Isoelectric Point: 6.1725

>NTDB_id=361654 FCN77_RS08255 WP_055798340.1 1797847..1798902(+) (recA) [Arthrobacter sp. 24S4-2]
MAAAPDRQKALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHA
VANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDM
GDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVG
NRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQGMENSRRFLRDNPELAAEL
ERLIKEKLGVGVKPAEAEKEASPKLKAVDGF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=361654 FCN77_RS08255 WP_055798340.1 1797847..1798902(+) (recA) [Arthrobacter sp. 24S4-2]
ATGGCGGCAGCCCCGGATCGTCAGAAGGCGCTCGACGCAGCGCTTGCACAGATTGACAAGCAGTTCGGCAAAGGCTCCGT
CATGCGGCTGGGCGACGAAGTGCGGGCCCCCATTGAAGTGATTCCCACCGGCTCCATCGCCCTGGACGTCGCGCTGGGAA
TTGGCGGCCTGCCGCGCGGCCGTGTCGTGGAAATCTACGGACCGGAATCGTCGGGTAAGACCACCGTCGCGCTTCACGCT
GTGGCGAATGCCCAGCGCCTGGGTGGAATCGCTGCGTTCATCGACGCCGAGCACGCCCTGGATCCGGAATACGCCGCCAA
GCTGGGTGTCGATACGGACGCCCTCCTGGTGTCACAGCCGGACACCGGCGAGCAGGCCCTGGAAATCATGGACATGCTGA
TCGGCTCGGGGTCCCTCGATGTCATCGTCATCGACTCCGTCGCCGCACTGGTGCCCCGTGCGGAAATCGAAGGCGACATG
GGCGACAGCCACGTAGGTCTGCAGGCCCGCCTCATGAGTCAGGCGCTCCGAAAGATCACCGGACGCCTGAGCCAGACCAA
GACCACCGCCATCTTCATCAACCAGCTGCGCGAAAAGATCGGTGTGTTCTTCGGATCCCCCGAAACCACTACCGGTGGTA
AAGCCCTGAAGTTCTACGCGTCCATCCGCATCGATGTCCGCCGGATCCAGACCCTCAAAGAGGGCGCCGATTCCGTGGGC
AACCGCACCAAGGCGAAGATCGTCAAGAACAAGATGGCCCCGCCCTTCAAGATCGCCGAATTCGACATCATTTATGGCCA
GGGCATCTCCCGTGAGGGCGGCATCATCGACATGGGCGTGGAGCATGGCCTGATCAAGAAGTCCGGTTCCTGGTTCACCT
ACGACGGTGACCAGCTGGGCCAGGGCATGGAGAACTCGCGGCGCTTCCTGCGCGACAACCCGGAGCTGGCCGCGGAACTG
GAGCGCCTCATCAAGGAGAAGCTCGGCGTCGGCGTCAAGCCCGCCGAGGCTGAAAAGGAAGCGTCACCGAAGCTCAAGGC
CGTTGACGGCTTCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q5P0T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.314

96.296

0.61
  recA Acinetobacter baumannii D1279779

61.404

97.436

0.598
  recA Ralstonia pseudosolanacearum GMI1000

67.093

89.174

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

92.593

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

93.732

0.593
  recA Streptococcus mutans UA159

59.483

99.145

0.59
  recA Vibrio cholerae strain A1552

63.777

92.023

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

92.023

0.587
  recA Helicobacter pylori strain NCTC11637

62.424

94.017

0.587
  recA Helicobacter pylori 26695

62.424

94.017

0.587
  recA Streptococcus mitis SK321

58.286

99.715

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

61.078

95.157

0.581
  recA Neisseria gonorrhoeae strain FA1090

60

96.866

0.581
  recA Neisseria gonorrhoeae MS11

60

96.866

0.581
  recA Neisseria gonorrhoeae MS11

60

96.866

0.581
  recA Streptococcus mitis NCTC 12261

58

99.715

0.578
  recA Streptococcus pyogenes NZ131

61.89

93.447

0.578
  recA Acinetobacter baylyi ADP1

62.848

92.023

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.35

92.877

0.57
  recA Glaesserella parasuis strain SC1401

61.801

91.738

0.567
  recA Streptococcus pneumoniae D39

59.878

93.732

0.561
  recA Streptococcus pneumoniae Rx1

59.878

93.732

0.561
  recA Streptococcus pneumoniae R6

59.878

93.732

0.561
  recA Streptococcus pneumoniae TIGR4

59.878

93.732

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.878

93.732

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.063

90.598

0.544

Multiple sequence alignment