Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FA707_RS01350 Genome accession   NZ_CP039712
Coordinates   273294..274343 (+) Length   349 a.a.
NCBI ID   WP_136952538.1    Uniprot ID   A0A4D7CRQ8
Organism   Vagococcus zengguangii strain MN-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 268294..279343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA707_RS01330 (FA707_01330) - 268400..268660 (+) 261 WP_246032330.1 hypothetical protein -
  FA707_RS01335 (FA707_01335) - 268831..270117 (+) 1287 WP_136952536.1 MFS transporter -
  FA707_RS01340 (FA707_01340) - 270121..271890 (+) 1770 WP_136952537.1 sugar-binding domain-containing protein -
  FA707_RS01345 (FA707_01345) cinA 271955..273205 (+) 1251 WP_136954142.1 competence/damage-inducible protein A Machinery gene
  FA707_RS01350 (FA707_01350) recA 273294..274343 (+) 1050 WP_136952538.1 recombinase RecA Machinery gene
  FA707_RS01355 (FA707_01355) - 274718..275656 (+) 939 WP_136952539.1 2-dehydropantoate 2-reductase -
  FA707_RS01360 (FA707_01360) - 275703..276746 (+) 1044 WP_136952540.1 PTS sugar transporter subunit IIC -
  FA707_RS01365 (FA707_01365) rny 277192..278757 (+) 1566 WP_136952541.1 ribonuclease Y -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37541.89 Da        Isoelectric Point: 4.6840

>NTDB_id=360285 FA707_RS01350 WP_136952538.1 273294..274343(+) (recA) [Vagococcus zengguangii strain MN-17]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTVSSGSIALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAAKLGVNIDELLLSQPDTGEQGLEIAEALVTSGAIDIIIIDSVAALVPRAEIDGEMGD
SHMGLQARLMSQALRKLSGTINKTKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKNGTDIIGNR
TRIKVVKNKVAPPFKQIEVDIMYGQGISMVGELLDMAADIDIVDKSGAWYSYKEERMGQGRENAKQFLIDNPEIMSEIYN
AVRTAFGIGSSTVAATEEVEDGLDLDLED

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=360285 FA707_RS01350 WP_136952538.1 273294..274343(+) (recA) [Vagococcus zengguangii strain MN-17]
TTGGCAGATGATCGTAAAGTCGCCTTAGATGCGGCGTTAAAGAAGATAGAGAAAAACTTTGGTAAAGGTTCTATTATGAA
GCTAGGTGAAAAAGTTGATACGCAAATTTCAACTGTTTCAAGTGGTTCTATTGCGTTAGACGTTGCATTAGGTGTAGGTG
GCTACCCTCGTGGACGTATTATTGAAGTGTATGGCCCAGAAAGTTCTGGTAAAACAACGGTTGCCTTACATGCGATTGCA
GAAGTGCAAAAACAAGGTGGAACAGCAGCCTTTATCGATGCTGAGCATGCCTTAGATCCTGCTTACGCGGCTAAATTAGG
TGTAAATATTGATGAATTATTACTTTCTCAACCAGATACTGGTGAGCAAGGTTTAGAAATTGCGGAAGCGTTAGTAACAA
GTGGTGCAATTGATATTATCATCATTGACTCGGTAGCGGCGTTGGTACCACGTGCTGAGATTGATGGTGAAATGGGTGAC
TCACACATGGGTCTACAAGCGCGTTTAATGTCACAAGCCTTACGTAAATTATCAGGTACTATTAATAAAACCAAAACAAT
TGCCATTTTTATTAACCAAATTCGTGAGAAAATTGGGGTAATGTTTGGTAATCCTGAAACAACACCAGGTGGACGTGCCT
TGAAATTCTATTCAACTATTCGTTTAGAAGTGCGTCGTGCTGAACAAATCAAAAACGGGACTGATATTATCGGTAACCGC
ACACGTATTAAAGTGGTGAAAAATAAAGTAGCACCACCTTTCAAACAAATTGAAGTGGACATTATGTATGGTCAAGGGAT
TTCAATGGTCGGTGAATTATTAGATATGGCTGCGGACATTGACATTGTTGATAAGAGCGGGGCTTGGTACTCATACAAAG
AAGAACGTATGGGGCAAGGACGCGAAAACGCTAAACAATTCTTAATCGATAATCCTGAAATTATGTCGGAAATCTATAAC
GCAGTTCGTACAGCTTTTGGAATCGGTAGCAGCACGGTAGCGGCAACTGAAGAAGTAGAAGATGGTTTAGATTTAGACTT
AGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7CRQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.675

93.41

0.754
  recA Bacillus subtilis subsp. subtilis str. 168

77.879

94.556

0.736
  recA Streptococcus mitis SK321

66.574

100

0.685
  recA Streptococcus pyogenes NZ131

66.667

100

0.682
  recA Streptococcus mitis NCTC 12261

70.821

94.269

0.668
  recA Streptococcus pneumoniae D39

70.213

94.269

0.662
  recA Streptococcus pneumoniae TIGR4

70.213

94.269

0.662
  recA Streptococcus pneumoniae R6

70.213

94.269

0.662
  recA Streptococcus pneumoniae Rx1

70.213

94.269

0.662
  recA Streptococcus mutans UA159

69.369

95.415

0.662
  recA Lactococcus lactis subsp. cremoris KW2

66.565

94.269

0.628
  recA Ralstonia pseudosolanacearum GMI1000

63.222

94.269

0.596
  recA Neisseria gonorrhoeae strain FA1090

60.641

98.281

0.596
  recA Neisseria gonorrhoeae MS11

60.641

98.281

0.596
  recA Neisseria gonorrhoeae MS11

60.641

98.281

0.596
  recA Acinetobacter baylyi ADP1

59.249

99.14

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587
  recA Acinetobacter baumannii D1279779

58.621

99.713

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.702

94.269

0.582
  recA Glaesserella parasuis strain SC1401

61.027

94.842

0.579
  recA Pseudomonas stutzeri DSM 10701

58.213

99.427

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.303

94.556

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

92.55

0.567
  recA Vibrio cholerae strain A1552

61.3

92.55

0.567
  recA Helicobacter pylori 26695

57.975

93.41

0.542
  recA Helicobacter pylori strain NCTC11637

57.975

93.41

0.542

Multiple sequence alignment