Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FA707_RS01345 Genome accession   NZ_CP039712
Coordinates   271955..273205 (+) Length   416 a.a.
NCBI ID   WP_136954142.1    Uniprot ID   A0A4D7CXT0
Organism   Vagococcus zengguangii strain MN-17     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 266955..278205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA707_RS01325 (FA707_01325) - 267228..268259 (+) 1032 WP_136954140.1 branched-chain amino acid aminotransferase -
  FA707_RS01330 (FA707_01330) - 268400..268660 (+) 261 WP_246032330.1 hypothetical protein -
  FA707_RS01335 (FA707_01335) - 268831..270117 (+) 1287 WP_136952536.1 MFS transporter -
  FA707_RS01340 (FA707_01340) - 270121..271890 (+) 1770 WP_136952537.1 sugar-binding domain-containing protein -
  FA707_RS01345 (FA707_01345) cinA 271955..273205 (+) 1251 WP_136954142.1 competence/damage-inducible protein A Machinery gene
  FA707_RS01350 (FA707_01350) recA 273294..274343 (+) 1050 WP_136952538.1 recombinase RecA Machinery gene
  FA707_RS01355 (FA707_01355) - 274718..275656 (+) 939 WP_136952539.1 2-dehydropantoate 2-reductase -
  FA707_RS01360 (FA707_01360) - 275703..276746 (+) 1044 WP_136952540.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45119.38 Da        Isoelectric Point: 4.7915

>NTDB_id=360284 FA707_RS01345 WP_136954142.1 271955..273205(+) (cinA) [Vagococcus zengguangii strain MN-17]
MRAEIIAVGTELLMGQVVNTNATFLSDQLTGLGYGVYYQTVVGDNVGRLRECLALASQRSELIVLTGGLGPTEDDLTRET
LADFLGVDLEIDEVGLTKIERHFTLQKRVVTENNRKQALSLVGSHTLQNPTGLAVGDFYQQAGQPAYLLLPGPPSEMKPM
FLEAAVPLLKEYLPQSTSLYSRVVRFFGIGESQLVTLLSNEITQQTNPTIAPYAAPNEVRLRLTVQASDEAQANQLLDTL
EARIMAVAGNYFYGYGEDNSLVQETVKALREAHATVAVAESLTAGLVQSSLGKLSGVSEVFVGGFVTYSNEMKEQLLGVK
AATLAEHGAVSRECAIEMASNTRRLTGADYALSLTGVAGPNEVEGQPVGTTWLALAKPDGSIMSEAFRFTRHREYIQHSA
MMNALNMLRLELLNKK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=360284 FA707_RS01345 WP_136954142.1 271955..273205(+) (cinA) [Vagococcus zengguangii strain MN-17]
ATGCGAGCGGAGATTATTGCAGTAGGAACAGAGTTGTTGATGGGACAGGTAGTCAATACGAATGCCACGTTTTTATCAGA
TCAATTAACCGGTTTAGGCTATGGTGTGTATTATCAAACGGTAGTTGGTGATAATGTTGGACGTTTACGCGAGTGCTTAG
CGTTAGCGAGTCAGCGAAGTGAGTTGATTGTTTTAACTGGTGGCTTAGGGCCAACCGAAGACGATTTGACGCGTGAAACA
TTAGCGGATTTCTTAGGGGTTGACTTAGAGATTGACGAAGTAGGTCTAACCAAGATTGAACGTCATTTTACGTTGCAAAA
ACGCGTCGTAACGGAGAATAACCGCAAACAGGCGTTATCGCTAGTCGGTAGTCATACGCTACAAAATCCGACTGGTTTAG
CGGTCGGTGATTTTTATCAACAAGCTGGACAGCCGGCGTATTTATTGTTGCCTGGTCCACCAAGTGAAATGAAACCGATG
TTTTTAGAGGCAGCAGTGCCATTATTAAAAGAATATTTACCGCAATCAACGAGTCTGTATTCGCGGGTTGTGCGTTTCTT
TGGAATTGGTGAATCGCAACTCGTGACCTTGTTATCGAATGAAATTACGCAACAAACGAATCCAACAATTGCCCCGTATG
CAGCGCCAAATGAAGTGCGTTTACGTTTGACGGTGCAAGCATCTGACGAAGCGCAAGCTAATCAATTGTTAGATACACTT
GAAGCGCGTATTATGGCAGTAGCAGGCAATTATTTTTACGGTTATGGTGAAGATAACAGCTTAGTGCAAGAAACAGTTAA
AGCCTTGCGTGAGGCGCATGCAACGGTTGCAGTAGCTGAAAGTTTAACAGCCGGTCTTGTTCAAAGTTCGCTAGGTAAAT
TATCGGGTGTTTCTGAGGTGTTTGTCGGAGGATTTGTGACGTATTCAAATGAGATGAAAGAGCAGTTATTAGGGGTTAAG
GCCGCAACCTTGGCTGAGCATGGGGCAGTGAGTCGCGAGTGTGCAATTGAGATGGCTAGTAACACGCGTCGTTTGACAGG
CGCGGACTATGCCTTATCGTTAACGGGTGTCGCAGGTCCTAATGAAGTTGAAGGTCAGCCAGTTGGGACGACTTGGCTTG
CGCTAGCTAAACCTGATGGCAGCATTATGAGCGAAGCCTTTCGTTTCACGCGTCATCGTGAATATATTCAACATAGCGCG
ATGATGAATGCGTTAAATATGTTGCGTTTGGAATTATTGAATAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7CXT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.763

100

0.505
  cinA Streptococcus pneumoniae R6

49.289

100

0.5
  cinA Streptococcus pneumoniae Rx1

49.289

100

0.5
  cinA Streptococcus pneumoniae D39

49.052

100

0.498
  cinA Streptococcus mitis SK321

48.578

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.578

100

0.493
  cinA Streptococcus mutans UA159

48.21

100

0.486
  cinA Bacillus subtilis subsp. subtilis str. 168

45.783

99.76

0.457
  cinA Streptococcus suis isolate S10

44.175

99.038

0.438

Multiple sequence alignment