Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E4Z98_RS08270 Genome accession   NZ_CP038865
Coordinates   1717294..1718337 (-) Length   347 a.a.
NCBI ID   WP_135254224.1    Uniprot ID   A0AAJ5EG36
Organism   Vagococcus xieshaowenii strain CF-49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1712294..1723337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS08245 (E4Z98_08245) - 1712350..1713603 (-) 1254 WP_135254228.1 methionine gamma-lyase family protein -
  E4Z98_RS08250 (E4Z98_08250) hflX 1713605..1714837 (-) 1233 WP_135254227.1 GTPase HflX -
  E4Z98_RS08255 (E4Z98_08255) miaA 1714830..1715795 (-) 966 WP_135254226.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  E4Z98_RS08260 (E4Z98_08260) - 1715797..1716534 (-) 738 WP_241856686.1 glycerophosphodiester phosphodiesterase -
  E4Z98_RS08265 (E4Z98_08265) - 1716548..1717045 (-) 498 WP_135254225.1 hypothetical protein -
  E4Z98_RS08270 (E4Z98_08270) recA 1717294..1718337 (-) 1044 WP_135254224.1 recombinase RecA Machinery gene
  E4Z98_RS08275 (E4Z98_08275) cinA 1718427..1719674 (-) 1248 WP_135254223.1 competence/damage-inducible protein A Machinery gene
  E4Z98_RS08280 (E4Z98_08280) - 1719902..1720174 (-) 273 WP_135254222.1 hypothetical protein -
  E4Z98_RS08285 (E4Z98_08285) - 1720358..1721389 (-) 1032 WP_241856688.1 branched-chain amino acid aminotransferase -
  E4Z98_RS08290 (E4Z98_08290) - 1721499..1722122 (-) 624 WP_135254220.1 DUF47 family protein -
  E4Z98_RS08295 (E4Z98_08295) - 1722140..1723117 (-) 978 WP_135254248.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37370.74 Da        Isoelectric Point: 4.7407

>NTDB_id=356054 E4Z98_RS08270 WP_135254224.1 1717294..1718337(-) (recA) [Vagococcus xieshaowenii strain CF-49]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTVSSGSIALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAAKLGVNIDELLLSQPDTGEQGLEIAEALVTSGAIDIIIIDSVAALVPRAEIDGEMGD
SHMGLQARLMSQALRKLSGTINKTKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKNGTDIIGNR
TRIKVVKNKVAPPFKQVEVDIMYGQGISMVGELLDMAADIDIVDKSGAWYSYKEERMGQGRENAKQFLLDNTEIMDEIYN
AVRSAYGIGNGAVTVTEEVEEGLDLEI

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=356054 E4Z98_RS08270 WP_135254224.1 1717294..1718337(-) (recA) [Vagococcus xieshaowenii strain CF-49]
TTGGCAGATGATCGTAAAGTCGCTCTAGATGCGGCGTTAAAGAAGATAGAGAAAAACTTTGGTAAAGGTTCAATTATGAA
GCTAGGTGAAAAAGTTGATACACAAATTTCAACCGTTTCAAGTGGCTCTATTGCGTTAGACGTTGCGTTAGGTGTAGGTG
GCTATCCTCGTGGACGTATCATTGAAGTATACGGTCCAGAAAGTTCTGGTAAGACGACTGTGGCACTACATGCTATTGCT
GAAGTGCAAAAACAAGGTGGAACTGCAGCGTTTATCGATGCCGAGCATGCGTTAGATCCAGCATACGCAGCTAAATTAGG
TGTTAATATTGACGAATTATTACTTTCTCAACCAGATACAGGGGAGCAAGGATTAGAGATTGCTGAAGCTTTAGTAACAA
GTGGTGCGATTGATATTATTATTATTGACTCTGTGGCAGCGTTAGTTCCTCGTGCTGAAATCGATGGTGAGATGGGTGAT
TCTCATATGGGTCTACAAGCCCGTTTAATGTCTCAAGCACTACGTAAGTTATCAGGAACGATTAATAAAACAAAAACTAT
TGCTATTTTCATTAACCAAATTCGTGAGAAAATTGGTGTAATGTTTGGTAACCCAGAAACAACACCAGGTGGTCGTGCAT
TGAAGTTCTATTCAACGATTCGTTTAGAAGTTCGTCGTGCAGAACAAATTAAAAACGGTACAGATATTATTGGTAACCGT
ACACGTATTAAAGTAGTGAAGAATAAAGTAGCCCCACCATTTAAACAAGTTGAAGTAGACATTATGTACGGTCAAGGGAT
TTCAATGGTTGGTGAGTTATTAGATATGGCAGCGGATATCGATATTGTCGATAAAAGTGGTGCGTGGTACTCATATAAAG
AAGAACGTATGGGACAAGGACGTGAAAATGCTAAACAATTCTTATTAGATAATACAGAAATTATGGATGAAATTTATAAT
GCTGTTCGTAGTGCGTATGGAATTGGTAATGGCGCAGTAACGGTAACCGAAGAAGTTGAAGAAGGTTTAGATTTAGAAAT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.793

94.524

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

78.485

95.101

0.746
  recA Streptococcus pneumoniae D39

67.826

99.424

0.674
  recA Streptococcus pneumoniae Rx1

67.826

99.424

0.674
  recA Streptococcus pneumoniae R6

67.826

99.424

0.674
  recA Streptococcus pneumoniae TIGR4

67.826

99.424

0.674
  recA Streptococcus mitis NCTC 12261

70.181

95.677

0.671
  recA Streptococcus mutans UA159

69.67

95.965

0.669
  recA Streptococcus mitis SK321

69.578

95.677

0.666
  recA Streptococcus pyogenes NZ131

68.882

95.389

0.657
  recA Lactococcus lactis subsp. cremoris KW2

66.869

94.813

0.634
  recA Ralstonia pseudosolanacearum GMI1000

64.22

94.236

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.411

98.271

0.594
  recA Acinetobacter baumannii D1279779

59.195

100

0.594
  recA Neisseria gonorrhoeae strain FA1090

62.31

94.813

0.591
  recA Neisseria gonorrhoeae MS11

62.31

94.813

0.591
  recA Neisseria gonorrhoeae MS11

62.31

94.813

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Glaesserella parasuis strain SC1401

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

95.101

0.576
  recA Pseudomonas stutzeri DSM 10701

57.061

100

0.571
  recA Acinetobacter baylyi ADP1

60.991

93.084

0.568
  recA Vibrio cholerae strain A1552

60.991

93.084

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

93.084

0.568
  recA Helicobacter pylori strain NCTC11637

58.282

93.948

0.548
  recA Helicobacter pylori 26695

58.282

93.948

0.548

Multiple sequence alignment