Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   E4Z98_RS08275 Genome accession   NZ_CP038865
Coordinates   1718427..1719674 (-) Length   415 a.a.
NCBI ID   WP_135254223.1    Uniprot ID   A0AAJ5EF14
Organism   Vagococcus xieshaowenii strain CF-49     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713427..1724674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS08250 (E4Z98_08250) hflX 1713605..1714837 (-) 1233 WP_135254227.1 GTPase HflX -
  E4Z98_RS08255 (E4Z98_08255) miaA 1714830..1715795 (-) 966 WP_135254226.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  E4Z98_RS08260 (E4Z98_08260) - 1715797..1716534 (-) 738 WP_241856686.1 glycerophosphodiester phosphodiesterase -
  E4Z98_RS08265 (E4Z98_08265) - 1716548..1717045 (-) 498 WP_135254225.1 hypothetical protein -
  E4Z98_RS08270 (E4Z98_08270) recA 1717294..1718337 (-) 1044 WP_135254224.1 recombinase RecA Machinery gene
  E4Z98_RS08275 (E4Z98_08275) cinA 1718427..1719674 (-) 1248 WP_135254223.1 competence/damage-inducible protein A Machinery gene
  E4Z98_RS08280 (E4Z98_08280) - 1719902..1720174 (-) 273 WP_135254222.1 hypothetical protein -
  E4Z98_RS08285 (E4Z98_08285) - 1720358..1721389 (-) 1032 WP_241856688.1 branched-chain amino acid aminotransferase -
  E4Z98_RS08290 (E4Z98_08290) - 1721499..1722122 (-) 624 WP_135254220.1 DUF47 family protein -
  E4Z98_RS08295 (E4Z98_08295) - 1722140..1723117 (-) 978 WP_135254248.1 inorganic phosphate transporter -
  E4Z98_RS08300 (E4Z98_08300) rpsT 1723454..1723714 (+) 261 WP_135254219.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45156.30 Da        Isoelectric Point: 4.7770

>NTDB_id=356055 E4Z98_RS08275 WP_135254223.1 1718427..1719674(-) (cinA) [Vagococcus xieshaowenii strain CF-49]
MRAEIIAVGTELLMGQVVNTNATFLSEQLTGLGYQIYFQTVVGDNRERLNDCLSLATERSDLIVLTGGLGPTEDDLTRET
LAHFLDAELAIDQAGLEKIIQHFTIQGRELTDNNRKQALSLVGGQTLTNPTGLAVGDFYQTPSNAYLLLPGPPSEMKPMF
LQEAVPLLQDRLPQNNQLFSRVMRFFGIGESQLVTVLADEISGQTNPTIAPYAAPNEVRLRLTAQARNNLAANQLLDSLE
KRIMALVGDYFYGYGEENSLVKETVQALKDSHATLAVAESLTAGLVQSTLGQLPGVSEVFVGGFVTYSNEMKQQLLGVEE
ATLAKHGAVSRECAKEMAVNTRRLTGADYALSLTGVAGPSEVEGKAVGTTWIALAKPDGTVQTQAYRFTRDRTYIQHSAM
MNGLNSLRIELLNKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=356055 E4Z98_RS08275 WP_135254223.1 1718427..1719674(-) (cinA) [Vagococcus xieshaowenii strain CF-49]
ATGCGAGCAGAAATTATTGCAGTGGGAACAGAGCTATTGATGGGACAAGTTGTTAACACAAACGCGACATTCTTGTCAGA
GCAATTAACCGGATTAGGGTATCAGATATACTTTCAAACAGTTGTGGGAGATAATAGGGAACGTCTAAATGACTGTCTAT
CATTAGCAACTGAACGTAGTGATTTGATTGTCCTTACAGGTGGACTAGGTCCTACAGAAGATGACTTAACCCGAGAAACA
TTAGCTCATTTTTTGGATGCTGAATTAGCGATTGATCAGGCTGGATTGGAAAAGATCATCCAACATTTTACCATTCAGGG
ACGTGAATTAACGGATAATAACCGTAAACAGGCCTTATCTCTTGTTGGCGGCCAAACATTAACTAATCCAACAGGTTTAG
CTGTGGGGGATTTTTATCAGACACCGTCGAACGCTTATTTATTATTACCAGGACCGCCAAGTGAAATGAAACCTATGTTT
CTTCAAGAAGCGGTGCCATTATTACAAGATAGATTGCCACAAAATAATCAGTTGTTTTCACGTGTTATGCGCTTCTTTGG
TATCGGAGAATCACAATTAGTCACTGTATTAGCTGATGAAATCAGCGGACAAACAAATCCAACTATTGCGCCTTATGCAG
CCCCAAATGAAGTGCGTTTACGATTGACGGCACAAGCAAGAAATAATTTGGCAGCCAATCAATTATTAGATTCATTAGAA
AAGCGTATTATGGCGTTAGTCGGTGATTATTTTTATGGTTATGGTGAAGAAAATAGTTTAGTGAAAGAAACCGTACAAGC
ATTAAAAGATTCCCATGCAACACTCGCTGTGGCGGAAAGTTTAACAGCTGGCCTTGTCCAAAGTACGTTGGGGCAGTTGC
CTGGTGTTTCCGAAGTGTTTGTCGGAGGCTTTGTGACATACTCAAATGAGATGAAACAACAGTTATTAGGGGTGGAAGAG
GCGACATTAGCTAAACATGGTGCAGTGAGTCGTGAGTGCGCAAAAGAGATGGCAGTCAACACGCGTCGTTTGACTGGGGC
AGATTATGCTTTATCGCTAACGGGTGTAGCCGGTCCTAGTGAGGTGGAAGGCAAAGCTGTAGGGACAACCTGGATTGCTT
TAGCAAAACCTGATGGAACCGTTCAAACACAAGCGTATCGTTTTACTCGTGACCGTACGTATATTCAGCATAGTGCGATG
ATGAATGGGTTGAATAGTTTACGAATAGAATTGCTAAATAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.406

100

0.501
  cinA Streptococcus mutans UA159

49.522

100

0.499
  cinA Streptococcus pneumoniae Rx1

48.931

100

0.496
  cinA Streptococcus pneumoniae R6

48.931

100

0.496
  cinA Streptococcus pneumoniae D39

48.694

100

0.494
  cinA Streptococcus mitis SK321

48.456

100

0.492
  cinA Streptococcus mitis NCTC 12261

48.456

100

0.492
  cinA Bacillus subtilis subsp. subtilis str. 168

46.135

99.759

0.46
  cinA Streptococcus suis isolate S10

42.336

99.036

0.419

Multiple sequence alignment