Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FF011L_RS03170 Genome accession   NZ_CP036262
Coordinates   826682..827836 (-) Length   384 a.a.
NCBI ID   WP_145350114.1    Uniprot ID   A0A517MAQ7
Organism   Roseimaritima multifibrata strain FF011L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821682..832836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF011L_RS03155 (FF011L_06740) - 823090..823893 (+) 804 WP_145350111.1 hypothetical protein -
  FF011L_RS03160 (FF011L_06750) - 823806..824249 (-) 444 WP_145350112.1 hypothetical protein -
  FF011L_RS03165 (FF011L_06760) - 824258..826321 (-) 2064 WP_145350113.1 PTS sugar transporter subunit IIA -
  FF011L_RS26990 - 826491..826613 (+) 123 WP_261342557.1 hypothetical protein -
  FF011L_RS03170 (FF011L_06770) recA 826682..827836 (-) 1155 WP_145350114.1 recombinase RecA Machinery gene
  FF011L_RS03175 (FF011L_06780) - 828183..828560 (+) 378 WP_145350115.1 2Fe-2S iron-sulfur cluster-binding protein -
  FF011L_RS03180 (FF011L_06790) - 828557..829648 (+) 1092 WP_145350116.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  FF011L_RS03185 (FF011L_06800) - 829667..830779 (+) 1113 WP_218932986.1 D-TA family PLP-dependent enzyme -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 40761.61 Da        Isoelectric Point: 6.3671

>NTDB_id=347764 FF011L_RS03170 WP_145350114.1 826682..827836(-) (recA) [Roseimaritima multifibrata strain FF011L]
MAKKSKTSSTTTRASSRAKAAGTDPKLKALLEREPGLKTTLEQIDNAFGKGAIMPLGANSNLSIPGIPTGSLSLDMALGG
QGIPRGRIIEIYGPESSGKTTLALHVCGEAQKEGGIAAIIDAEHAFDPSWAKKLGVELDTLLVSQPSSGEEAMQICEMLV
KSNAVDVIVIDSVAALVPKKELEGEIGDSHVGLQARLMSQSMRKLTGAISKSKCAVIFINQIREKIGVMFGSPETTPGGR
ALKFYCSCRIDVRRTGALKDGEEQVGQRVKAKIVKNKVAPPFRIAEFDMMHSNGISYEGDVLDLGTTHKIVSRSGAWFKL
GDTYLGQGKEKARNFLIENPEICEGIRQKVMEVGGFAGPLEDAAGETESAAEDSTADEEAVGNS

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=347764 FF011L_RS03170 WP_145350114.1 826682..827836(-) (recA) [Roseimaritima multifibrata strain FF011L]
ATGGCTAAGAAAAGCAAAACAAGCAGCACCACCACTCGGGCTTCCAGTCGAGCCAAGGCGGCCGGAACGGACCCCAAGCT
GAAAGCACTGCTGGAACGAGAACCGGGCTTAAAAACGACCCTCGAGCAGATCGACAACGCCTTTGGCAAAGGGGCAATCA
TGCCCTTGGGAGCCAATTCGAACCTGTCGATTCCCGGCATTCCGACCGGCTCGCTTAGCCTGGACATGGCCCTTGGCGGT
CAAGGGATTCCTCGCGGCCGAATCATCGAAATCTACGGCCCGGAATCGAGCGGTAAAACGACCCTCGCCCTGCACGTCTG
CGGCGAGGCCCAAAAAGAGGGAGGAATCGCAGCGATCATCGACGCAGAACACGCGTTTGACCCCAGTTGGGCTAAAAAGC
TTGGCGTGGAGCTGGACACATTGCTTGTCAGCCAACCCAGCAGTGGTGAAGAAGCGATGCAGATTTGCGAAATGCTGGTG
AAAAGCAACGCGGTCGATGTCATCGTGATTGACTCGGTGGCAGCCCTGGTTCCGAAAAAGGAACTGGAAGGTGAAATCGG
AGACAGCCACGTTGGCCTGCAAGCTCGTTTGATGAGCCAATCGATGCGGAAATTGACCGGAGCCATTTCGAAAAGCAAAT
GTGCGGTCATCTTCATCAACCAAATTCGCGAAAAAATCGGAGTCATGTTCGGCAGTCCCGAAACGACTCCGGGCGGTCGA
GCCCTCAAGTTCTACTGCTCTTGCCGAATCGATGTCCGCCGAACGGGGGCCCTGAAAGATGGCGAAGAACAGGTCGGACA
GCGGGTCAAAGCGAAAATCGTAAAGAATAAGGTCGCTCCGCCATTCCGGATCGCTGAATTCGACATGATGCACTCCAACG
GAATTAGCTACGAAGGAGACGTTCTGGACCTGGGAACCACCCACAAAATCGTCTCTCGCAGTGGAGCTTGGTTCAAACTT
GGCGATACCTATCTCGGACAAGGTAAAGAGAAAGCCCGTAATTTCCTTATTGAAAACCCGGAAATCTGTGAAGGCATTCG
CCAAAAGGTGATGGAGGTTGGTGGGTTCGCGGGTCCTTTAGAGGATGCGGCAGGTGAAACCGAATCGGCGGCCGAAGATT
CGACCGCCGATGAAGAAGCCGTTGGTAACAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(37-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A517MAQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

60

84.635

0.508
  recA Vibrio cholerae strain A1552

56.725

89.063

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.725

89.063

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.485

86.979

0.5
  recA Streptococcus pneumoniae Rx1

53.672

92.188

0.495
  recA Streptococcus pneumoniae TIGR4

53.672

92.188

0.495
  recA Streptococcus pneumoniae R6

53.672

92.188

0.495
  recA Streptococcus pneumoniae D39

53.672

92.188

0.495
  recA Pseudomonas stutzeri DSM 10701

59.748

82.813

0.495
  recA Streptococcus mitis NCTC 12261

53.409

91.667

0.49
  recA Streptococcus mutans UA159

52.528

92.708

0.487
  recA Streptococcus mitis SK321

52.841

91.667

0.484
  recA Lactococcus lactis subsp. cremoris KW2

56.535

85.677

0.484
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.959

88.802

0.479
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.269

85.156

0.479
  recA Acinetobacter baylyi ADP1

53.179

90.104

0.479
  recA Ralstonia pseudosolanacearum GMI1000

58.9

80.469

0.474
  recA Neisseria gonorrhoeae MS11

57.962

81.771

0.474
  recA Neisseria gonorrhoeae strain FA1090

57.962

81.771

0.474
  recA Neisseria gonorrhoeae MS11

57.962

81.771

0.474
  recA Glaesserella parasuis strain SC1401

56.74

83.073

0.471
  recA Helicobacter pylori strain NCTC11637

55.901

83.854

0.469
  recA Helicobacter pylori 26695

55.59

83.854

0.466
  recA Latilactobacillus sakei subsp. sakei 23K

53.614

86.458

0.464
  recA Streptococcus pyogenes NZ131

54.799

84.115

0.461
  recA Acinetobacter baumannii D1279779

55

83.333

0.458

Multiple sequence alignment