Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EXW62_RS17340 Genome accession   NZ_CP036034
Coordinates   3454931..3455962 (-) Length   343 a.a.
NCBI ID   WP_215553933.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3449931..3460962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS17320 (EXW62_17710) - 3450369..3451292 (-) 924 WP_215553931.1 dipeptidase -
  EXW62_RS17325 (EXW62_17715) spoVS 3451352..3451612 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW62_RS17330 (EXW62_17720) - 3451762..3452556 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW62_RS17335 (EXW62_17725) rny 3452885..3454447 (-) 1563 WP_215553932.1 ribonuclease Y -
  EXW62_RS17340 (EXW62_17730) recA 3454931..3455962 (-) 1032 WP_215553933.1 recombinase RecA Machinery gene
  EXW62_RS17345 (EXW62_17735) cinA 3456105..3457343 (-) 1239 WP_215553934.1 competence/damage-inducible protein A Machinery gene
  EXW62_RS17350 (EXW62_17740) pgsA 3457364..3457942 (-) 579 WP_215553935.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW62_RS17355 (EXW62_17745) - 3458006..3458902 (-) 897 WP_215553936.1 RodZ domain-containing protein -
  EXW62_RS17360 (EXW62_17750) - 3458924..3459709 (-) 786 WP_002066761.1 DUF3388 domain-containing protein -
  EXW62_RS17365 (EXW62_17755) - 3459849..3460097 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW62_RS17370 (EXW62_17760) - 3460173..3460886 (-) 714 WP_215553937.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37307.24 Da        Isoelectric Point: 5.1896

>NTDB_id=346083 EXW62_RS17340 WP_215553933.1 3454931..3455962(-) (recA) [Bacillus mycoides strain BPN57/2]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAGHRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=346083 EXW62_RS17340 WP_215553933.1 3454931..3455962(-) (recA) [Bacillus mycoides strain BPN57/2]
ATGAGCGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGGGCATAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTGTTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCGGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGGGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAATTAAAGCAAGGTAACGACATTGTTGGTAATAAAACG
AAAATAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACACGGAAGATTCAACTCGTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.087

97.085

0.845
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.335

0.726
  recA Streptococcus pneumoniae D39

67.93

100

0.679
  recA Streptococcus pneumoniae Rx1

67.93

100

0.679
  recA Streptococcus pneumoniae R6

67.93

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.93

100

0.679
  recA Streptococcus mutans UA159

66.377

100

0.668
  recA Streptococcus pyogenes NZ131

69.817

95.627

0.668
  recA Streptococcus mitis SK321

69.091

96.21

0.665
  recA Streptococcus mitis NCTC 12261

69.091

96.21

0.665
  recA Lactococcus lactis subsp. cremoris KW2

66.964

97.959

0.656
  recA Neisseria gonorrhoeae strain FA1090

63.422

98.834

0.627
  recA Neisseria gonorrhoeae MS11

63.422

98.834

0.627
  recA Neisseria gonorrhoeae MS11

63.422

98.834

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

98.251

0.621
  recA Ralstonia pseudosolanacearum GMI1000

68.051

91.254

0.621
  recA Helicobacter pylori 26695

62.5

95.627

0.598
  recA Helicobacter pylori strain NCTC11637

62.5

95.627

0.598
  recA Acinetobacter baumannii D1279779

59.824

99.417

0.595
  recA Glaesserella parasuis strain SC1401

61.261

97.085

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Acinetobacter baylyi ADP1

61.491

93.878

0.577
  recA Pseudomonas stutzeri DSM 10701

61.562

93.294

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

92.128

0.56

Multiple sequence alignment