Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW62_RS17345 Genome accession   NZ_CP036034
Coordinates   3456105..3457343 (-) Length   412 a.a.
NCBI ID   WP_215553934.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3451105..3462343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS17325 (EXW62_17715) spoVS 3451352..3451612 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW62_RS17330 (EXW62_17720) - 3451762..3452556 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW62_RS17335 (EXW62_17725) rny 3452885..3454447 (-) 1563 WP_215553932.1 ribonuclease Y -
  EXW62_RS17340 (EXW62_17730) recA 3454931..3455962 (-) 1032 WP_215553933.1 recombinase RecA Machinery gene
  EXW62_RS17345 (EXW62_17735) cinA 3456105..3457343 (-) 1239 WP_215553934.1 competence/damage-inducible protein A Machinery gene
  EXW62_RS17350 (EXW62_17740) pgsA 3457364..3457942 (-) 579 WP_215553935.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW62_RS17355 (EXW62_17745) - 3458006..3458902 (-) 897 WP_215553936.1 RodZ domain-containing protein -
  EXW62_RS17360 (EXW62_17750) - 3458924..3459709 (-) 786 WP_002066761.1 DUF3388 domain-containing protein -
  EXW62_RS17365 (EXW62_17755) - 3459849..3460097 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW62_RS17370 (EXW62_17760) - 3460173..3460886 (-) 714 WP_215553937.1 SDR family oxidoreductase -
  EXW62_RS17375 (EXW62_17765) - 3461003..3462289 (-) 1287 WP_215553938.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45541.90 Da        Isoelectric Point: 5.1147

>NTDB_id=346084 EXW62_RS17345 WP_215553934.1 3456105..3457343(-) (cinA) [Bacillus mycoides strain BPN57/2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEEALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEADKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=346084 EXW62_RS17345 WP_215553934.1 3456105..3457343(-) (cinA) [Bacillus mycoides strain BPN57/2]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAATTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTCGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAGAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
GCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTCGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCAAAATGCTGATGAGGCGGACAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGCG
TCTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGCACTGACGGCGCGGTTAGTAAACAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGGATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACCGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment