Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EXW58_RS17270 Genome accession   NZ_CP035953
Coordinates   3381785..3382210 (-) Length   141 a.a.
NCBI ID   WP_002111333.1    Uniprot ID   A0A1W6ABW2
Organism   Bacillus mycoides strain BPN03/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3376785..3387210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW58_RS17250 (EXW58_17490) - 3377264..3378187 (-) 924 WP_215579425.1 dipeptidase -
  EXW58_RS17255 (EXW58_17495) spoVS 3378247..3378507 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW58_RS17260 (EXW58_17500) - 3378657..3379451 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW58_RS17265 (EXW58_17505) rny 3379739..3381301 (-) 1563 WP_002160762.1 ribonuclease Y -
  EXW58_RS17270 (EXW58_17510) recA 3381785..3382210 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  EXW58_RS17275 (EXW58_17515) - 3382477..3383099 (-) 623 Protein_3367 topoisomerase I -
  EXW58_RS17280 (EXW58_17520) recA 3383197..3383805 (-) 609 Protein_3368 recombinase RecA -
  EXW58_RS17285 (EXW58_17525) cinA 3383949..3385187 (-) 1239 WP_215579428.1 competence/damage-inducible protein A Machinery gene
  EXW58_RS17290 (EXW58_17530) pgsA 3385208..3385786 (-) 579 WP_016105953.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW58_RS17295 (EXW58_17535) - 3385850..3386776 (-) 927 WP_215582158.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15991.81 Da        Isoelectric Point: 4.9286

>NTDB_id=345271 EXW58_RS17270 WP_002111333.1 3381785..3382210(-) (recA) [Bacillus mycoides strain BPN03/1]
MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV
QKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 426 bp        

>NTDB_id=345271 EXW58_RS17270 WP_002111333.1 3381785..3382210(-) (recA) [Bacillus mycoides strain BPN03/1]
GTGCCAGAAACAACTCCAGGTGGTCGTGCGTTGAAATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAATT
AAAGCAAGGTAATGACATCGTTGGTAATAAAACGAAAGTAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGCGTTG
CTGAAGTTGATATTATGTACGGAGAAGGTATTTCAAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTT
CAAAAGAGCGGTGCTTGGTACTCTTATAATGAAGAACGCTTAGGGCAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGA
GAATACGGATTTAAGAGAGGAAATTGCCTTCTTTGTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACA
CGGAAGATTCAACTCGTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6ABW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

79.231

92.199

0.73
  recA Latilactobacillus sakei subsp. sakei 23K

65.873

89.362

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.481

95.745

0.589
  recA Streptococcus pneumoniae TIGR4

56.738

100

0.567
  recA Streptococcus pneumoniae Rx1

56.738

100

0.567
  recA Streptococcus pneumoniae D39

56.738

100

0.567
  recA Streptococcus pneumoniae R6

56.738

100

0.567
  recA Ralstonia pseudosolanacearum GMI1000

63.71

87.943

0.56
  recA Streptococcus mutans UA159

55.714

99.291

0.553
  recA Helicobacter pylori 26695

60.63

90.071

0.546
  recA Helicobacter pylori strain NCTC11637

60.63

90.071

0.546
  recA Streptococcus pyogenes NZ131

60.63

90.071

0.546
  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539
  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539
  recA Neisseria gonorrhoeae strain FA1090

55.474

97.163

0.539
  recA Streptococcus mitis NCTC 12261

58.594

90.78

0.532
  recA Streptococcus mitis SK321

58.594

90.78

0.532
  recA Lactococcus lactis subsp. cremoris KW2

55.97

95.035

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.8

88.652

0.504
  recA Acinetobacter baumannii D1279779

50

99.291

0.496
  recA Glaesserella parasuis strain SC1401

50.376

94.326

0.475
  recA Acinetobacter baylyi ADP1

53.719

85.816

0.461
  recA Pseudomonas stutzeri DSM 10701

55.263

80.851

0.447
  recA Vibrio cholerae O1 biovar El Tor strain E7946

51.667

85.106

0.44
  recA Vibrio cholerae strain A1552

51.667

85.106

0.44
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.826

81.56

0.39

Multiple sequence alignment