Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW58_RS17285 Genome accession   NZ_CP035953
Coordinates   3383949..3385187 (-) Length   412 a.a.
NCBI ID   WP_215579428.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN03/1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3378949..3390187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW58_RS17265 (EXW58_17505) rny 3379739..3381301 (-) 1563 WP_002160762.1 ribonuclease Y -
  EXW58_RS17270 (EXW58_17510) recA 3381785..3382210 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  EXW58_RS17275 (EXW58_17515) - 3382477..3383099 (-) 623 Protein_3367 topoisomerase I -
  EXW58_RS17280 (EXW58_17520) recA 3383197..3383805 (-) 609 Protein_3368 recombinase RecA -
  EXW58_RS17285 (EXW58_17525) cinA 3383949..3385187 (-) 1239 WP_215579428.1 competence/damage-inducible protein A Machinery gene
  EXW58_RS17290 (EXW58_17530) pgsA 3385208..3385786 (-) 579 WP_016105953.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW58_RS17295 (EXW58_17535) - 3385850..3386776 (-) 927 WP_215582158.1 helix-turn-helix domain-containing protein -
  EXW58_RS17300 (EXW58_17540) - 3386798..3387583 (-) 786 WP_002066761.1 DUF3388 domain-containing protein -
  EXW58_RS17305 (EXW58_17545) - 3387723..3387971 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW58_RS17310 (EXW58_17550) - 3388047..3388760 (-) 714 WP_002160757.1 SDR family oxidoreductase -
  EXW58_RS17315 (EXW58_17555) - 3388878..3390164 (-) 1287 WP_002014592.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45620.05 Da        Isoelectric Point: 5.1169

>NTDB_id=345272 EXW58_RS17285 WP_215579428.1 3383949..3385187(-) (cinA) [Bacillus mycoides strain BPN03/1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASNLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAEKLIQYVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEYKEPGTVFIGLAIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=345272 EXW58_RS17285 WP_215579428.1 3383949..3385187(-) (cinA) [Bacillus mycoides strain BPN03/1]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCATCTAATTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGTCAAACGAACCCAACCATTGCACCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCAAAATGCTGATGAGGCGGAGAAACTGATTCAGTATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGCG
TCTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTGCCTGAAGAAGTG
TTACGCACTGACGGCGCGGTTAGTAAACAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGGATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGTATAAAGAACCAGGAACCGTATTTATTGGATTGGCGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus pneumoniae TIGR4

46.301

100

0.471
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

45.823

100

0.466
  cinA Streptococcus pneumoniae R6

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus pneumoniae D39

45.585

100

0.464
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.379

91.505

0.379

Multiple sequence alignment