Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ETT70_RS08750 Genome accession   NZ_CP035429
Coordinates   1703095..1704231 (-) Length   378 a.a.
NCBI ID   WP_002992179.1    Uniprot ID   A0A4Q1QZP2
Organism   Streptococcus pyogenes strain emmNA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1694599..1722420 1703095..1704231 within 0


Gene organization within MGE regions


Location: 1694599..1722420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT70_RS08705 (ETT70_08695) nrdG 1694599..1695213 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ETT70_RS08710 (ETT70_08700) - 1695228..1695722 (-) 495 WP_136275899.1 GNAT family N-acetyltransferase -
  ETT70_RS08715 (ETT70_08705) - 1695731..1696666 (-) 936 WP_136106359.1 Gfo/Idh/MocA family protein -
  ETT70_RS09270 - 1696695..1696841 (-) 147 WP_011106921.1 hypothetical protein -
  ETT70_RS08720 (ETT70_08710) nrdD 1697023..1699221 (-) 2199 WP_002992831.1 anaerobic ribonucleoside-triphosphate reductase -
  ETT70_RS08725 (ETT70_08715) - 1699318..1700877 (-) 1560 WP_111677537.1 DUF2079 domain-containing protein -
  ETT70_RS08730 (ETT70_08720) - 1701290..1701595 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT70_RS08735 (ETT70_08725) ruvX 1701607..1702026 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ETT70_RS08740 (ETT70_08730) - 1702023..1702292 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ETT70_RS08745 (ETT70_08735) spx 1702406..1702804 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT70_RS08750 (ETT70_08740) recA 1703095..1704231 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  ETT70_RS08755 (ETT70_08745) cinA 1704320..1705591 (-) 1272 WP_136112430.1 competence/damage-inducible protein A Machinery gene
  ETT70_RS08760 (ETT70_08750) - 1705660..1706220 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  ETT70_RS08765 (ETT70_08755) ruvA 1706230..1706826 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  ETT70_RS08770 (ETT70_08760) - 1706828..1708048 (-) 1221 WP_002992187.1 MFS transporter -
  ETT70_RS08775 (ETT70_08765) mutL 1708059..1710041 (-) 1983 WP_136076690.1 DNA mismatch repair endonuclease MutL -
  ETT70_RS08780 (ETT70_08770) - 1710136..1711281 (-) 1146 WP_021299091.1 site-specific integrase -
  ETT70_RS08785 (ETT70_08775) - 1711609..1711752 (+) 144 WP_002992192.1 putative holin-like toxin -
  ETT70_RS08790 (ETT70_08780) - 1712601..1713368 (-) 768 WP_003058809.1 helix-turn-helix transcriptional regulator -
  ETT70_RS08795 (ETT70_08785) - 1713522..1713728 (+) 207 WP_002992503.1 helix-turn-helix transcriptional regulator -
  ETT70_RS08800 (ETT70_08790) - 1713762..1713962 (+) 201 WP_002992502.1 helix-turn-helix domain-containing protein -
  ETT70_RS08805 (ETT70_08795) - 1713983..1714390 (+) 408 WP_002992501.1 hypothetical protein -
  ETT70_RS09435 - 1714403..1714525 (+) 123 WP_002992500.1 hypothetical protein -
  ETT70_RS08810 (ETT70_08800) - 1714806..1715327 (+) 522 WP_002992498.1 Rha family transcriptional regulator -
  ETT70_RS08815 (ETT70_08805) - 1715572..1715904 (+) 333 WP_002992497.1 hypothetical protein -
  ETT70_RS08820 (ETT70_08810) - 1715904..1716095 (+) 192 WP_080032246.1 hypothetical protein -
  ETT70_RS08825 (ETT70_08815) - 1716107..1716469 (+) 363 WP_136118488.1 hypothetical protein -
  ETT70_RS08830 (ETT70_08820) - 1716466..1716795 (+) 330 WP_000174505.1 hypothetical protein -
  ETT70_RS08835 (ETT70_08825) - 1716798..1717070 (+) 273 WP_001100459.1 hypothetical protein -
  ETT70_RS08840 (ETT70_08830) - 1717071..1717928 (+) 858 WP_002992489.1 primase alpha helix C-terminal domain-containing protein -
  ETT70_RS08845 (ETT70_08835) - 1717897..1719585 (+) 1689 WP_002992487.1 phage/plasmid primase, P4 family -
  ETT70_RS08850 (ETT70_08840) - 1719872..1720045 (+) 174 WP_003045773.1 hypothetical protein -
  ETT70_RS09275 - 1720051..1720224 (+) 174 WP_164972313.1 hypothetical protein -
  ETT70_RS08855 (ETT70_08845) - 1720226..1720735 (+) 510 WP_032464630.1 hypothetical protein -
  ETT70_RS08860 (ETT70_08850) - 1720809..1721297 (+) 489 WP_002992480.1 hypothetical protein -
  ETT70_RS08870 (ETT70_08860) - 1721700..1722062 (+) 363 WP_003058730.1 DUF1492 domain-containing protein -
  ETT70_RS08875 (ETT70_08865) - 1722037..1722420 (+) 384 WP_023612665.1 ArpU family phage packaging/lysis transcriptional regulator -

Sequence


Protein


Download         Length: 378 a.a.        Molecular weight: 40631.23 Da        Isoelectric Point: 4.9004

>NTDB_id=341135 ETT70_RS08750 WP_002992179.1 1703095..1704231(-) (recA) [Streptococcus pyogenes strain emmNA]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=341135 ETT70_RS08750 WP_002992179.1 1703095..1704231(-) (recA) [Streptococcus pyogenes strain emmNA]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCTCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTCGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGATCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCACAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4Q1QZP2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.735

100

0.997

  recA Streptococcus mutans UA159

87.467

100

0.886

  recA Streptococcus mitis NCTC 12261

85.34

100

0.862

  recA Streptococcus pneumoniae Rx1

84.416

100

0.86

  recA Streptococcus pneumoniae D39

84.416

100

0.86

  recA Streptococcus pneumoniae R6

84.416

100

0.86

  recA Streptococcus pneumoniae TIGR4

84.416

100

0.86

  recA Streptococcus mitis SK321

85.302

100

0.86

  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735

  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593

  recA Acinetobacter baylyi ADP1

60

92.593

0.556

  recA Acinetobacter baumannii D1279779

59.49

93.386

0.556

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553

  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545

  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545

  recA Neisseria gonorrhoeae strain FA1090

60.058

90.741

0.545

  recA Vibrio cholerae strain A1552

58.286

92.593

0.54

  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54

  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.45

0.534

  recA Pseudomonas stutzeri DSM 10701

56.897

92.063

0.524

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516

  recA Helicobacter pylori 26695

58.084

88.36

0.513

  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513

  recA Ralstonia pseudosolanacearum GMI1000

57.831

87.831

0.508


Multiple sequence alignment