Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ERO09_RS09950 Genome accession   NZ_CP035368
Coordinates   2007276..2008331 (-) Length   351 a.a.
NCBI ID   WP_014064545.1    Uniprot ID   A0A1F0UC94
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2002276..2013331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS09905 (ERO09_09915) coaA 2002588..2003523 (-) 936 WP_128787946.1 type I pantothenate kinase -
  ERO09_RS09930 (ERO09_09940) tuf 2004225..2005409 (+) 1185 WP_049362643.1 elongation factor Tu -
  ERO09_RS09935 (ERO09_09945) - 2005567..2006385 (+) 819 WP_128787947.1 Cof-type HAD-IIB family hydrolase -
  ERO09_RS09940 (ERO09_09950) crcB 2006386..2006781 (+) 396 WP_049369600.1 fluoride efflux transporter CrcB -
  ERO09_RS09945 (ERO09_09955) recX 2006756..2007208 (-) 453 WP_128787948.1 recombination regulator RecX -
  ERO09_RS09950 (ERO09_09960) recA 2007276..2008331 (-) 1056 WP_014064545.1 recombinase RecA Machinery gene
  ERO09_RS09955 (ERO09_09965) sxy/tfoX 2008803..2009471 (+) 669 WP_128787950.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37570.03 Da        Isoelectric Point: 4.9529

>NTDB_id=339361 ERO09_RS09950 WP_014064545.1 2007276..2008331(-) (recA) [Haemophilus parainfluenzae strain LC_1315_18]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=339361 ERO09_RS09950 WP_014064545.1 2007276..2008331(-) (recA) [Haemophilus parainfluenzae strain LC_1315_18]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGCTGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAGGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACAGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGGTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGCAAAACTTGTGCATTTATCGACGCGGAACATGCTCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTGAAAGAACTTTTAGTTTCCCAACCCGACAATGGTGAACAAGCACTTGAAATTTGTGATGCCTTAG
TGCGCTCTGGAGCAGTAGATGTCGTTATTGTGGACTCGGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCACGTCTGATGTCTCAAGCACTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGTCTTGTTATCTTCATTAATCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATTCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGGTCATTGGT
AACGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCCGCACCTTTCCGCCAAGTAGATTTCCAAATTCTTTATGGAGA
AGGTATCTCTAAAGCAGGCGAATTAATTGAACTTGGTGTTAAACATAAACTTGTTGAGAAATCCGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCTAATGCAATGAAATGGTTACATGAAAATCCTGCGAAATCAGACGAACTT
GAAGCGAAGCTTCGCGCTGAATTGGTCGCTAATCCTGAACAAGCATTAATGGCTGATATTGAACAATCTAATGATGACGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F0UC94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.453

98.006

0.749
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.166

92.877

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541

Multiple sequence alignment