Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ERO09_RS09955 Genome accession   NZ_CP035368
Coordinates   2008803..2009471 (+) Length   222 a.a.
NCBI ID   WP_128787950.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003803..2014471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS09930 (ERO09_09940) tuf 2004225..2005409 (+) 1185 WP_049362643.1 elongation factor Tu -
  ERO09_RS09935 (ERO09_09945) - 2005567..2006385 (+) 819 WP_128787947.1 Cof-type HAD-IIB family hydrolase -
  ERO09_RS09940 (ERO09_09950) crcB 2006386..2006781 (+) 396 WP_049369600.1 fluoride efflux transporter CrcB -
  ERO09_RS09945 (ERO09_09955) recX 2006756..2007208 (-) 453 WP_128787948.1 recombination regulator RecX -
  ERO09_RS09950 (ERO09_09960) recA 2007276..2008331 (-) 1056 WP_014064545.1 recombinase RecA Machinery gene
  ERO09_RS09955 (ERO09_09965) sxy/tfoX 2008803..2009471 (+) 669 WP_128787950.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25449.78 Da        Isoelectric Point: 10.3912

>NTDB_id=339362 ERO09_RS09955 WP_128787950.1 2008803..2009471(+) (sxy/tfoX) [Haemophilus parainfluenzae strain LC_1315_18]
MKILPIPNDNITKVCDLLNQLIGDVTSKNLFTGYGLFHKQKDMFAVWVNNKVYLRAKDELSIKLKGLGCKSFTTNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLDLALSKIGRIRDLPNLSIKYERALNKVGVDNVDTLRKIGAENAI
VRLKKADISASEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRASKKVS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=339362 ERO09_RS09955 WP_128787950.1 2008803..2009471(+) (sxy/tfoX) [Haemophilus parainfluenzae strain LC_1315_18]
ATGAAAATCTTACCGATACCTAATGATAATATTACCAAAGTATGTGATCTGCTAAATCAACTTATTGGCGATGTGACAAG
TAAGAATCTATTTACGGGATATGGCTTGTTTCATAAACAAAAAGATATGTTTGCTGTTTGGGTAAACAATAAAGTTTACT
TGCGAGCTAAGGATGAGCTTTCAATAAAATTAAAAGGACTTGGATGTAAATCTTTTACAACAAATGAACTCAATAAGCGT
TTTGTATTATCTGATTATTATGCTTTAACCGAAAGTATCTTGAAGGACAACGTTCTAATGAGAACTTTGATTATTCTTTC
AATTACTCAAATAAGGAAGGAAAAACTCGATCTTGCGCTATCTAAGATTGGACGAATCAGGGACTTGCCAAATTTATCGA
TAAAGTATGAACGGGCATTAAACAAAGTAGGGGTTGATAATGTTGATACTTTACGAAAAATTGGTGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTAGTGCAAGTGAAGCTTTTTATTGGCGACTTCGTGGAGCTTTGGAAAATCGTAATTG
TGAGTTTTACACTGAAAAAGAGAAGGAAAGAGGGCTTAGTAAACTTAATGAAATACTCTCCGCAAATGGATTTAGACGTT
GTAAACGAGCATCCAAAAAGGTTAGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.416

94.144

0.541

Multiple sequence alignment