Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LHK_RS03730 Genome accession   NC_012559
Coordinates   760433..761497 (+) Length   354 a.a.
NCBI ID   WP_012696278.1    Uniprot ID   A0A248LGK6
Organism   Laribacter hongkongensis HLHK9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 755433..766497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS03710 (LHK_00788) - 755509..756303 (+) 795 WP_012696273.1 alpha/beta fold hydrolase -
  LHK_RS03715 (LHK_00789) - 756407..757189 (+) 783 WP_012696274.1 enoyl-CoA hydratase/isomerase family protein -
  LHK_RS03720 (LHK_00790) - 757242..758375 (+) 1134 WP_012696275.1 phospholipase A -
  LHK_RS03725 (LHK_00791) - 759045..760358 (+) 1314 WP_012696276.1 sodium-dependent transporter -
  LHK_RS03730 (LHK_00793) recA 760433..761497 (+) 1065 WP_012696278.1 recombinase RecA Machinery gene
  LHK_RS03735 (LHK_00794) recX 761564..762022 (+) 459 WP_012696279.1 recombination regulator RecX -
  LHK_RS03740 (LHK_00795) prmB 762039..762950 (+) 912 WP_012696280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  LHK_RS03745 (LHK_00796) - 763117..763722 (-) 606 WP_051189935.1 LysE/ArgO family amino acid transporter -
  LHK_RS03750 (LHK_00797) - 763822..764715 (+) 894 WP_012696282.1 LysR family transcriptional regulator ArgP -
  LHK_RS03755 (LHK_00798) - 764721..765503 (-) 783 WP_012696283.1 enoyl-CoA hydratase-related protein -
  LHK_RS03760 (LHK_00799) - 765588..766274 (+) 687 WP_012696284.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38176.56 Da        Isoelectric Point: 4.9620

>NTDB_id=33747 LHK_RS03730 WP_012696278.1 760433..761497(+) (recA) [Laribacter hongkongensis HLHK9]
MAETDKQKALSAALSQIEKQFGKGSIMRMNETQVNDNLQVISTGSLGLDMALGVGGLPRGRVVEIYGPESSGKTTLCLQV
VAEAQKLGGTCAYIDAENALDPVYAGKLGVKVDDLLVSQPDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKTDEIIG
NETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKIGQGKDNAREWLRENPAIAQEI
EKKIRTAAGVGGMNEFVPSSEEQAEASLSEDHDQ

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=33747 LHK_RS03730 WP_012696278.1 760433..761497(+) (recA) [Laribacter hongkongensis HLHK9]
ATGGCCGAAACCGACAAGCAAAAAGCCCTTTCTGCCGCACTGTCCCAAATCGAAAAGCAGTTCGGCAAGGGCTCGATCAT
GCGCATGAACGAGACGCAGGTGAACGACAACCTGCAAGTCATTTCGACCGGTTCGCTCGGGCTGGACATGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGGGTGGTGGAAATCTACGGTCCGGAATCGTCGGGCAAGACCACCCTGTGCCTGCAGGTG
GTGGCCGAAGCGCAAAAGCTCGGTGGTACCTGTGCCTACATCGACGCTGAAAACGCGCTGGATCCGGTGTATGCCGGCAA
GCTCGGCGTCAAGGTGGACGACCTGCTGGTTTCGCAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGCGACATGCTGG
TGCGCTCGGGCGGGGTGGACGTGATCGTGGTCGACTCGGTGGCCGCACTGGTGCCGAAGGCCGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTCCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ATGCACTGAAGTTCTACGCCTCGGTGCGTCTCGACATCCGCCGCATCGGTGCCATCAAGAAGACCGACGAGATCATCGGC
AACGAAACCCGGGTCAAGGTCGTCAAGAACAAGGTCAGCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTGTATGGCGA
AGGGATCAGCCGCGAAGGCGAGATCATCGAGATGGGTGTGGCCAACAAGTTCGTCGACAAGTCCGGTGCCTGGTATGCCT
ACAACGGCCAGAAAATCGGCCAGGGCAAGGACAATGCCCGCGAATGGCTGCGTGAAAACCCCGCCATTGCCCAGGAAATC
GAAAAGAAGATCCGCACGGCTGCGGGTGTCGGCGGCATGAACGAATTCGTACCCAGCTCCGAAGAGCAGGCCGAAGCCAG
CCTGTCCGAAGACCACGACCAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248LGK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

77.914

92.09

0.718
  recA Neisseria gonorrhoeae MS11

77.914

92.09

0.718
  recA Neisseria gonorrhoeae strain FA1090

77.914

92.09

0.718
  recA Ralstonia pseudosolanacearum GMI1000

79.495

89.548

0.712
  recA Pseudomonas stutzeri DSM 10701

72.622

98.023

0.712
  recA Glaesserella parasuis strain SC1401

69.741

98.023

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.209

90.678

0.664
  recA Vibrio cholerae strain A1552

73.209

90.678

0.664
  recA Acinetobacter baylyi ADP1

67.341

97.74

0.658
  recA Acinetobacter baumannii D1279779

68.142

95.763

0.653
  recA Latilactobacillus sakei subsp. sakei 23K

61.932

99.435

0.616
  recA Helicobacter pylori strain NCTC11637

63.081

97.175

0.613
  recA Helicobacter pylori 26695

62.791

97.175

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.458

93.785

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.11

92.09

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

92.373

0.585
  recA Streptococcus mitis NCTC 12261

58.551

97.458

0.571
  recA Streptococcus mutans UA159

60.606

93.22

0.565
  recA Streptococcus pneumoniae TIGR4

60.121

93.503

0.562
  recA Streptococcus pneumoniae Rx1

60.121

93.503

0.562
  recA Streptococcus pneumoniae D39

60.121

93.503

0.562
  recA Streptococcus pneumoniae R6

60.121

93.503

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.938

0.562
  recA Streptococcus mitis SK321

59.819

93.503

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.697

93.22

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.655

0.548

Multiple sequence alignment