Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBR47_RS17065 Genome accession   NC_012491
Coordinates   3603791..3604849 (-) Length   352 a.a.
NCBI ID   WP_015891678.1    Uniprot ID   A0A4U2Y3J4
Organism   Brevibacillus brevis NBRC 100599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3598791..3609849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS17040 (BBR47_33910) - 3598937..3599875 (-) 939 WP_015891675.1 dipeptidase -
  BBR47_RS17045 (BBR47_33920) spoVS 3599984..3600244 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  BBR47_RS17050 (BBR47_33930) - 3600363..3601157 (-) 795 WP_015891676.1 TIGR00282 family metallophosphoesterase -
  BBR47_RS17055 (BBR47_33940) rny 3601267..3602808 (-) 1542 WP_007719154.1 ribonuclease Y -
  BBR47_RS17060 (BBR47_33950) - 3603080..3603721 (-) 642 WP_015891677.1 RecX family transcriptional regulator -
  BBR47_RS17065 (BBR47_33960) recA 3603791..3604849 (-) 1059 WP_015891678.1 recombinase RecA Machinery gene
  BBR47_RS17070 (BBR47_33970) - 3605016..3606605 (-) 1590 WP_015891679.1 DEAD/DEAH box helicase -
  BBR47_RS17075 (BBR47_33980) cinA 3606614..3607858 (-) 1245 WP_041749485.1 competence/damage-inducible protein A Machinery gene
  BBR47_RS17080 (BBR47_33990) pgsA 3607966..3608541 (-) 576 WP_015891681.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37894.04 Da        Isoelectric Point: 4.9093

>NTDB_id=33697 BBR47_RS17065 WP_015891678.1 3603791..3604849(-) (recA) [Brevibacillus brevis NBRC 100599]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNIQISTASSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPSSVPEAEAEHDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=33697 BBR47_RS17065 WP_015891678.1 3603791..3604849(-) (recA) [Brevibacillus brevis NBRC 100599]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAGATAGAAAAGCAGTTCGGTAAAGGTTCCATTATGAAGTT
GGGGGAAGTATCCAACATCCAGATTTCTACGGCTTCTAGCGGTGCGCTTGCTCTAGATATCGCACTTGGTGTGGGTGGTT
TCCCACGTGGACGGATTGTTGAGATTTACGGCCCAGAGTCTTCTGGTAAAACAACGGTAGCGCTTCATGCGATCGCAGAA
GTGCAAAGACAGGGTGGTCAGGCTGCGTTTATCGATGCAGAGCATGCCTTGGATCCGGTTTACGCTGCAAAGCTGGGTGT
GAACATCGACGAATTGCTGTTGTCCCAACCAGATACGGGTGAGCAAGCTTTGGAGATCGCGGAAGCACTGGTACGTTCTG
GTGCAGTAGACATTATCGTAGTTGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAGGGTGAGATGGGAGATTCT
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTCCGCAAGCTGTCTGGTGCCATCAATAAGTCCAAGACGATTGC
GATCTTCATCAACCAGCTTCGCGAAAAAGTGGGAGTTATGTTCGGTAACCCGGAAACAACGCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGACGTTCGTAAAGCTGAATCTATCAAAGTCGGTAACGATATTTTGGGAAGCAAGACG
AAGATCAAGGTCGTGAAAAATAAAGTAGCACCACCGTTCAAGGTTGCAGAAGTGGATATCATGTACGGCGAAGGTATTTC
CAGAGAAGGTAGCATTCTCGACATCGGTTCCGAGATCGATGTAGTACAAAAGAGTGGCGCATGGTACTCCTTCAATGAGG
AGCGACTCGGTCAAGGTAGAGAGAATTCGAAAGTCTTCTTGAAGGAAAATCCGCATATTGCCTCTCAGATTGAAACAAAG
GTGCGCGAATACTTCAGCCTGAACCCTAGTTCTGTTCCAGAAGCAGAGGCAGAACATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Y3J4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.325

94.318

0.767
  recA Latilactobacillus sakei subsp. sakei 23K

72.289

94.318

0.682
  recA Streptococcus mitis NCTC 12261

65.922

100

0.67
  recA Streptococcus mitis SK321

65.642

100

0.668
  recA Streptococcus pneumoniae D39

66.477

100

0.665
  recA Streptococcus pneumoniae Rx1

66.477

100

0.665
  recA Streptococcus pneumoniae R6

66.477

100

0.665
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.665
  recA Streptococcus mutans UA159

65.537

100

0.659
  recA Streptococcus pyogenes NZ131

70.031

92.898

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Vibrio cholerae strain A1552

65.152

93.75

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.152

93.75

0.611
  recA Glaesserella parasuis strain SC1401

61.605

99.148

0.611
  recA Ralstonia pseudosolanacearum GMI1000

67.619

89.489

0.605
  recA Acinetobacter baylyi ADP1

60.571

99.432

0.602
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Acinetobacter baumannii D1279779

60.117

96.875

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

91.193

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

92.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.909

0.563
  recA Helicobacter pylori 26695

59.337

94.318

0.56
  recA Helicobacter pylori strain NCTC11637

59.036

94.318

0.557

Multiple sequence alignment