Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SOR_RS02435 Genome accession   NC_015291
Coordinates   463715..464986 (-) Length   423 a.a.
NCBI ID   WP_001113199.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458715..469986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS02410 (SOR_0490) - 459916..460782 (-) 867 WP_000241135.1 SDR family NAD(P)-dependent oxidoreductase -
  SOR_RS02415 (SOR_0491) - 460784..461620 (-) 837 WP_000121101.1 alpha/beta fold hydrolase -
  SOR_RS02420 (SOR_0492) - 461634..462638 (-) 1005 WP_000861521.1 NADP-dependent oxidoreductase -
  SOR_RS02425 (SOR_0493) - 462729..463160 (-) 432 WP_000379849.1 Rrf2 family transcriptional regulator -
  SOR_RS02435 (SOR_0496) rarA 463715..464986 (-) 1272 WP_001113199.1 replication-associated recombination protein A Machinery gene
  SOR_RS02440 (SOR_0497) - 465102..465572 (+) 471 WP_000257115.1 DUF3013 family protein -
  SOR_RS02445 (SOR_0498) - 465591..466652 (+) 1062 WP_000719509.1 site-2 protease family protein -
  SOR_RS02450 (SOR_0499) - 466654..467082 (+) 429 WP_000401982.1 NUDIX hydrolase -
  SOR_RS02455 (SOR_0500) - 467079..467447 (+) 369 WP_000575303.1 hypothetical protein -
  SOR_RS02460 (SOR_0501) - 467506..467979 (+) 474 WP_000614682.1 GNAT family N-acetyltransferase -
  SOR_RS02465 (SOR_0502) prmA 468117..469067 (+) 951 WP_080568318.1 50S ribosomal protein L11 methyltransferase -
  SOR_RS02470 (SOR_0503) - 469069..469812 (+) 744 WP_001188216.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46963.38 Da        Isoelectric Point: 5.9485

>NTDB_id=33697 SOR_RS02435 WP_001113199.1 463715..464986(-) (rarA) [Streptococcus oralis Uo5]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKKALQ
TALSEPERGFDFPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGTRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYSGHWVKQDYLPEKIRDQHYFTP
EDTGKYERALAQRKETIDKLRDL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=33697 SOR_RS02435 WP_001113199.1 463715..464986(-) (rarA) [Streptococcus oralis Uo5]
ATGCCTGACAATCTCGCACTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAACATCTGGTCGGACCAGG
AAAAATCATCCGTCGCATGGTGGAGGCCAACCGCCTGTCCTCCATGATTCTCTACGGACCTCCAGGAATCGGCAAGACCA
GTATCGCTTCAGCCATCGCTGGAACGACCAAGTATGCCTTTCGGACCTTTAACGCGACAGTGGATAGTAAAAAGCGACTC
CAAGAAATCGCCGAAGAAGCTAAATTCTCTGGTGGATTGGTCCTACTACTGGATGAGATCCACCGTCTTGATAAGACCAA
GCAAGACTTTCTTCTGCCACTTTTGGAAAGTGGTCTGGTTATCATGATTGGCGCAACGACTGAAAATCCCTTCTTTTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAGATTTTTGAATTGGAACCCTTGTCCAATCAAGATGTTAAAAAAGCTCTTCAA
ACAGCTCTCAGCGAACCTGAGCGTGGTTTTGATTTCCCAGTAGAGCTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTACGTTCTGCCTTTAATTCACTAGATTTGGCTGTTCTCTCTACTCCTGAGAATGACAAGGGCACCC
GCCATATCACTCTTGATATCATGGAAAATAGCCTGCAACGAAGCTACATCACTATGGACAAGGATGGGGACGGTCACTAC
GATGTCCTCTCAGCCCTGCAAAAATCTATCCGCGGCTCGGATGTGGATGCCAGTCTTCATTACGCTGCTCGCTTGATTGA
AGCTGGGGATTTGCCTAGTCTAGCTCGTCGCTTGACTGTAATTGCCTATGAGGATATTGGTTTGGCCAATCCTGAGGCTC
AAATTCATACCGTAACTGCTCTAGAGGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATCCTCATTGCTAATGTCGTC
ATTGATCTGGCTCTTTCACCCAAGTCCAACTCAGCCTATGTGGCGATGGATAAGGCCCTTGCTGATCTCAAAACATCAGG
GCATTTGCCTATCCCTCGGCACCTGCGTGATGGTCATTACAGTGGAAGCAAGGAACTAGGGAACGCCCAAGATTATCTCT
ATCCCCATAACTATTCTGGACACTGGGTCAAACAAGACTATTTGCCAGAAAAAATACGTGATCAGCACTACTTCACTCCG
GAAGATACTGGCAAGTACGAACGGGCCTTGGCGCAACGCAAGGAAACCATTGATAAATTAAGGGACTTGTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.513

98.582

0.577

Multiple sequence alignment