Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BBR47_RS17075 Genome accession   NC_012491
Coordinates   3606614..3607858 (-) Length   414 a.a.
NCBI ID   WP_041749485.1    Uniprot ID   -
Organism   Brevibacillus brevis NBRC 100599     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3601614..3612858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS17060 (BBR47_33950) - 3603080..3603721 (-) 642 WP_015891677.1 RecX family transcriptional regulator -
  BBR47_RS17065 (BBR47_33960) recA 3603791..3604849 (-) 1059 WP_015891678.1 recombinase RecA Machinery gene
  BBR47_RS17070 (BBR47_33970) - 3605016..3606605 (-) 1590 WP_015891679.1 DEAD/DEAH box helicase -
  BBR47_RS17075 (BBR47_33980) cinA 3606614..3607858 (-) 1245 WP_041749485.1 competence/damage-inducible protein A Machinery gene
  BBR47_RS17080 (BBR47_33990) pgsA 3607966..3608541 (-) 576 WP_015891681.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBR47_RS17085 (BBR47_34000) rimO 3608542..3609888 (-) 1347 WP_015891682.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BBR47_RS17090 (BBR47_34010) - 3610000..3610899 (-) 900 WP_015891683.1 helix-turn-helix domain-containing protein -
  BBR47_RS17095 (BBR47_34020) - 3610912..3611691 (-) 780 WP_015891684.1 YmfK family protein -
  BBR47_RS17100 (BBR47_34030) - 3611800..3612069 (-) 270 WP_015891685.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44911.59 Da        Isoelectric Point: 5.6660

>NTDB_id=33698 BBR47_RS17075 WP_041749485.1 3606614..3607858(-) (cinA) [Brevibacillus brevis NBRC 100599]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
VAGHVGIGLETNSEAMERIEKFFSQRGIVMTKNNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSEMYPMV
ENYVMPYLTDLLPDKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITARAATVEEGETLILPVE
KEILSRVGQYMYGMGENSSLHDVLVSELKKRNETIACAESCTGGAIASLITAVPGSSQVFRGGVVCYTNEVKKQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGIAAEGMPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=33698 BBR47_RS17075 WP_041749485.1 3606614..3607858(-) (cinA) [Brevibacillus brevis NBRC 100599]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAACTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTTTACTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGACGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
GTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATTCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGAAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGCAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTATTGCCTGGACCACCTAGTGAGATGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACCGATTTGCTCCCCGATAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGCGAATCCGCTTTGGAGGAAAAACTGCTTGATCTGATCGAAAAGCAGGACAATCCAACCATCGCTCCATACGCCA
AAGAATTCGAAGTAACACTGCGAATTACGGCAAGAGCTGCTACAGTCGAAGAAGGAGAAACCTTGATTTTACCTGTAGAA
AAAGAAATCCTCAGCCGTGTTGGTCAGTACATGTACGGGATGGGGGAGAACTCGTCACTGCATGATGTGCTAGTTTCTGA
GTTGAAAAAGAGAAATGAGACAATTGCTTGTGCAGAAAGCTGTACAGGTGGAGCGATTGCCTCGTTGATTACCGCTGTGC
CAGGAAGCTCACAAGTGTTTCGTGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAAACAGCTGCTCGAAGTACCTGAC
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAAAAAACAGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATTTCCGTTACGGGAGTGGCTGGACCCGATCCTTCCGAGGGCAAGCCTGTTGGCCTTGTTTACGTGGGGA
TCGCGGCAGAAGGAATGCCCACAGTTGTAAAAGAGCTACGCCTTGCCGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGTTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

48.267

97.585

0.471
  cinA Streptococcus mitis NCTC 12261

48.02

97.585

0.469
  cinA Streptococcus pneumoniae TIGR4

47.772

97.585

0.466
  cinA Streptococcus pneumoniae Rx1

47.525

97.585

0.464
  cinA Streptococcus pneumoniae R6

47.525

97.585

0.464
  cinA Streptococcus pneumoniae D39

47.277

97.585

0.461
  cinA Streptococcus mutans UA159

45.614

96.377

0.44
  cinA Streptococcus suis isolate S10

40.506

95.411

0.386

Multiple sequence alignment