Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EQY74_RS10120 Genome accession   NZ_CP035228
Coordinates   1940230..1941276 (+) Length   348 a.a.
NCBI ID   WP_075752753.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935230..1946276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS10095 (EQY74_10095) - 1935928..1936185 (+) 258 WP_128739424.1 DUF3243 domain-containing protein -
  EQY74_RS10100 (EQY74_10100) - 1936433..1937224 (+) 792 WP_003181917.1 YmfK family protein -
  EQY74_RS10105 (EQY74_10105) - 1937242..1938144 (+) 903 WP_075752759.1 RodZ domain-containing protein -
  EQY74_RS10110 (EQY74_10110) pgsA 1938211..1938792 (+) 582 WP_075752757.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EQY74_RS10115 (EQY74_10115) cinA 1938812..1940062 (+) 1251 WP_075752755.1 competence/damage-inducible protein A Machinery gene
  EQY74_RS10120 (EQY74_10120) recA 1940230..1941276 (+) 1047 WP_075752753.1 recombinase RecA Machinery gene
  EQY74_RS10125 (EQY74_10125) rny 1941618..1943177 (+) 1560 WP_075752751.1 ribonuclease Y -
  EQY74_RS10130 (EQY74_10130) - 1943264..1944061 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  EQY74_RS10135 (EQY74_10135) spoVS 1944263..1944523 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  EQY74_RS10140 (EQY74_10140) - 1944629..1945549 (+) 921 WP_075753444.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37778.91 Da        Isoelectric Point: 4.7625

>NTDB_id=336293 EQY74_RS10120 WP_075752753.1 1940230..1941276(+) (recA) [Bacillus licheniformis strain SRCM103529]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGVAPAQEDDAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=336293 EQY74_RS10120 WP_075752753.1 1940230..1941276(+) (recA) [Bacillus licheniformis strain SRCM103529]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
GGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGACACGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTTATCGACGCCGAACACGCGCTCGACCCCGTCTATGCACAAAAGCTGGGTGT
CAACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCGCTTGAAATCGCCGAAGCTCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCTGTGGCAGCGCTTGTGCCGAAAGCTGAAATCGAAGGAGACATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAAGCGCTTCGTAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTCATGTTTGGAAATCCTGAGACGACACCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGTCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACGATGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCACCTCCGTTCCGGACGGCCGAAGTGGACATTATGTACGGGGAAGGGATTTC
AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTTCAAAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AACGTCTTGGACAAGGCCGTGAAAACGCCAAACAGTTCCTGAAAGAAAACAAGGACATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGATACTGGAGGCGTTGCTCCTGCGCAGGAAGACGATGCCCAAGCTCAGGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.402

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

74.769

93.391

0.698
  recA Streptococcus mitis NCTC 12261

67.733

98.851

0.67
  recA Streptococcus mitis SK321

67.341

99.425

0.67
  recA Streptococcus pneumoniae D39

69.069

95.69

0.661
  recA Streptococcus pneumoniae Rx1

69.069

95.69

0.661
  recA Streptococcus pneumoniae R6

69.069

95.69

0.661
  recA Streptococcus pneumoniae TIGR4

69.069

95.69

0.661
  recA Streptococcus mutans UA159

68.997

94.54

0.652
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.828

0.632
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.049

93.103

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.722

97.126

0.609
  recA Helicobacter pylori 26695

64.615

93.391

0.603
  recA Helicobacter pylori strain NCTC11637

64.615

93.391

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.966

0.595
  recA Acinetobacter baumannii D1279779

61.424

96.839

0.595
  recA Glaesserella parasuis strain SC1401

60.174

98.851

0.595
  recA Pseudomonas stutzeri DSM 10701

60.234

98.276

0.592
  recA Vibrio cholerae strain A1552

64.174

92.241

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.241

0.592
  recA Acinetobacter baylyi ADP1

62.733

92.529

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment