Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EQY74_RS10115 Genome accession   NZ_CP035228
Coordinates   1938812..1940062 (+) Length   416 a.a.
NCBI ID   WP_075752755.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103529     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1933812..1945062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS10090 (EQY74_10090) - 1935126..1935857 (+) 732 WP_075752763.1 SDR family oxidoreductase -
  EQY74_RS10095 (EQY74_10095) - 1935928..1936185 (+) 258 WP_128739424.1 DUF3243 domain-containing protein -
  EQY74_RS10100 (EQY74_10100) - 1936433..1937224 (+) 792 WP_003181917.1 YmfK family protein -
  EQY74_RS10105 (EQY74_10105) - 1937242..1938144 (+) 903 WP_075752759.1 RodZ domain-containing protein -
  EQY74_RS10110 (EQY74_10110) pgsA 1938211..1938792 (+) 582 WP_075752757.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EQY74_RS10115 (EQY74_10115) cinA 1938812..1940062 (+) 1251 WP_075752755.1 competence/damage-inducible protein A Machinery gene
  EQY74_RS10120 (EQY74_10120) recA 1940230..1941276 (+) 1047 WP_075752753.1 recombinase RecA Machinery gene
  EQY74_RS10125 (EQY74_10125) rny 1941618..1943177 (+) 1560 WP_075752751.1 ribonuclease Y -
  EQY74_RS10130 (EQY74_10130) - 1943264..1944061 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  EQY74_RS10135 (EQY74_10135) spoVS 1944263..1944523 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45618.90 Da        Isoelectric Point: 4.8606

>NTDB_id=336292 EQY74_RS10115 WP_075752755.1 1938812..1940062(+) (cinA) [Bacillus licheniformis strain SRCM103529]
MKLERKAEIIAVGSELLLGQIANTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLQLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDLIMERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VAEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=336292 EQY74_RS10115 WP_075752755.1 1938812..1940062(+) (cinA) [Bacillus licheniformis strain SRCM103529]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGCTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAACCCGGAACGCCTTA
AACAAGTGATTCAGACAGCACAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTTGGACCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGCCCTCTTCAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCGCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTCCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAAGGAAAAGATCGTGTCAAGGGTGCT
GCGGTTCTTCGGCATCGGAGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CCCCGCTTGCGGCCGACGGGGAAGTCACGCTCAGACTCACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCTCATCATGGAGCGGGTCGGAGAGTTCTTTTACGGGTATGATGATACATCGCTTGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCGGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTTTCAGCGGCCGGC
GTTGCCGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGTGCAAAAGAACTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATCGGCATCAGCTTTACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGAAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.442

100

0.764
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.476
  cinA Streptococcus mitis SK321

46.778

100

0.471
  cinA Streptococcus pneumoniae R6

46.778

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.778

100

0.471
  cinA Streptococcus pneumoniae D39

46.539

100

0.469
  cinA Streptococcus mutans UA159

46.377

99.519

0.462
  cinA Streptococcus suis isolate S10

40.909

95.192

0.389

Multiple sequence alignment