Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EKQ63_RS20140 Genome accession   NZ_CP034686
Coordinates   3485582..3486613 (-) Length   343 a.a.
NCBI ID   WP_001976711.1    Uniprot ID   A0A516QV33
Organism   Bacillus sp. BD59S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3480582..3491613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS20120 (EKQ63_20100) - 3481186..3482109 (-) 924 WP_143881467.1 dipeptidase -
  EKQ63_RS20125 (EKQ63_20105) spoVS 3482168..3482428 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EKQ63_RS20130 (EKQ63_20110) - 3482578..3483372 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  EKQ63_RS20135 (EKQ63_20115) rny 3483535..3485100 (-) 1566 WP_046198515.1 ribonuclease Y -
  EKQ63_RS20140 (EKQ63_20120) recA 3485582..3486613 (-) 1032 WP_001976711.1 recombinase RecA Machinery gene
  EKQ63_RS20145 (EKQ63_20125) cinA 3486758..3487996 (-) 1239 WP_042514732.1 competence/damage-inducible protein CinA Machinery gene
  EKQ63_RS20150 (EKQ63_20130) pgsA 3488017..3488595 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EKQ63_RS20155 (EKQ63_20135) - 3488659..3489570 (-) 912 WP_087954514.1 helix-turn-helix domain-containing protein -
  EKQ63_RS20160 (EKQ63_20140) - 3489592..3490377 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EKQ63_RS20165 (EKQ63_20145) - 3490517..3490765 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  EKQ63_RS20170 (EKQ63_20150) ymfI 3490841..3491554 (-) 714 WP_143881468.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37297.34 Da        Isoelectric Point: 4.9868

>NTDB_id=332492 EKQ63_RS20140 WP_001976711.1 3485582..3486613(-) (recA) [Bacillus sp. BD59S]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=332492 EKQ63_RS20140 WP_001976711.1 3485582..3486613(-) (recA) [Bacillus sp. BD59S]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGCGGCCGTATTATCGAGATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAG
GTACAGCGTCAAGGTGGACAAGCAGCATTCATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCGGAAGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCATTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTGGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGGTATGGAAGATCCAAGTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QV33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

68.155

97.959

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566

Multiple sequence alignment