Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EKQ63_RS20145 Genome accession   NZ_CP034686
Coordinates   3486758..3487996 (-) Length   412 a.a.
NCBI ID   WP_042514732.1    Uniprot ID   A0A516QV28
Organism   Bacillus sp. BD59S     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3481758..3492996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS20125 (EKQ63_20105) spoVS 3482168..3482428 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EKQ63_RS20130 (EKQ63_20110) - 3482578..3483372 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  EKQ63_RS20135 (EKQ63_20115) rny 3483535..3485100 (-) 1566 WP_046198515.1 ribonuclease Y -
  EKQ63_RS20140 (EKQ63_20120) recA 3485582..3486613 (-) 1032 WP_001976711.1 recombinase RecA Machinery gene
  EKQ63_RS20145 (EKQ63_20125) cinA 3486758..3487996 (-) 1239 WP_042514732.1 competence/damage-inducible protein CinA Machinery gene
  EKQ63_RS20150 (EKQ63_20130) pgsA 3488017..3488595 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EKQ63_RS20155 (EKQ63_20135) - 3488659..3489570 (-) 912 WP_087954514.1 helix-turn-helix domain-containing protein -
  EKQ63_RS20160 (EKQ63_20140) - 3489592..3490377 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EKQ63_RS20165 (EKQ63_20145) - 3490517..3490765 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  EKQ63_RS20170 (EKQ63_20150) ymfI 3490841..3491554 (-) 714 WP_143881468.1 elongation factor P 5-aminopentanone reductase -
  EKQ63_RS20175 (EKQ63_20155) yfmH 3491658..3492944 (-) 1287 WP_087996542.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45440.73 Da        Isoelectric Point: 5.2113

>NTDB_id=332493 EKQ63_RS20145 WP_042514732.1 3486758..3487996(-) (cinA) [Bacillus sp. BD59S]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=332493 EKQ63_RS20145 WP_042514732.1 3486758..3487996(-) (cinA) [Bacillus sp. BD59S]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCGCCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTTGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCGGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QV28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment