Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GEOB_RS05550 Genome accession   NC_011979
Coordinates   1225955..1226956 (+) Length   333 a.a.
NCBI ID   WP_012646204.1    Uniprot ID   B9M365
Organism   Geotalea daltonii FRC-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1220955..1231956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOB_RS05535 (Geob_1112) - 1221965..1222414 (+) 450 WP_012646201.1 phosphatidylglycerophosphatase A -
  GEOB_RS05540 (Geob_1113) - 1222411..1223652 (+) 1242 WP_012646202.1 competence/damage-inducible protein A -
  GEOB_RS05545 (Geob_1114) - 1223688..1225787 (+) 2100 WP_012646203.1 ATP-binding protein -
  GEOB_RS05550 (Geob_1115) recA 1225955..1226956 (+) 1002 WP_012646204.1 recombinase RecA Machinery gene
  GEOB_RS05555 (Geob_1116) - 1226960..1228108 (+) 1149 WP_012646205.1 type IV pilus twitching motility protein PilT -
  GEOB_RS05560 (Geob_1117) - 1228110..1228592 (+) 483 WP_012646206.1 regulatory protein RecX -
  GEOB_RS05565 (Geob_1118) alaS 1228634..1231264 (+) 2631 WP_012646207.1 alanine--tRNA ligase -
  GEOB_RS05570 (Geob_1119) - 1231279..1231623 (+) 345 WP_012646208.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35793.25 Da        Isoelectric Point: 5.8840

>NTDB_id=32803 GEOB_RS05550 WP_012646204.1 1225955..1226956(+) (recA) [Geotalea daltonii FRC-32]
MQEREKAIDLALSQIEKQFGKGSIMRLGNEEALPDVAAIPTGSLSLDIALGVGGVPRGRIIEIYGPESSGKTTLALHIVA
EAQKTEGIAAFIDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEITETLVRSGAIDVLVIDSVAALVPKAEIEGEMGD
SHMGLQARLMSQALRKLTAIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGSR
TKVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGIVDKSGAWFSYGKERIGQGRENSRIYLKQNPEICAEIKE
KLAQQTVPSGGGA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=32803 GEOB_RS05550 WP_012646204.1 1225955..1226956(+) (recA) [Geotalea daltonii FRC-32]
ATGCAGGAAAGAGAGAAGGCTATTGACCTGGCGTTGAGCCAGATAGAAAAGCAGTTCGGCAAGGGCTCCATAATGCGCCT
CGGCAATGAAGAGGCCTTGCCCGATGTGGCAGCCATACCCACCGGCTCCCTTTCCCTCGACATTGCCCTTGGTGTCGGTG
GCGTGCCCAGAGGGCGCATTATCGAAATCTACGGCCCGGAGTCGTCGGGAAAGACCACACTGGCACTGCACATCGTTGCA
GAAGCACAGAAAACGGAAGGTATTGCTGCTTTTATAGATGCCGAGCATGCACTGGATATCGGCTATGCCCGTAAGCTGGG
GGTGAAAACCGATGACCTGCTGGTTTCTCAGCCGGACACCGGTGAACAGGCCCTTGAAATAACGGAGACACTGGTGCGAA
GCGGCGCCATTGATGTCCTCGTTATCGATTCGGTAGCGGCGCTGGTGCCGAAGGCCGAGATCGAAGGGGAGATGGGGGAT
TCGCACATGGGGCTGCAGGCCCGCCTCATGTCACAGGCCCTGCGGAAGTTGACCGCTATCATCAGTAAATCCAACTGTTG
CGTCATCTTCATCAATCAGATCAGAATGAAAATCGGCGTCATGTTCGGCAATCCGGAAACAACCACTGGCGGCAACGCCC
TCAAATTTTACGCCTCGGTGCGTATGGACATCAGGAAGATTGCCAGCCTCAAGCAGGGAAATGATGTCATTGGCTCCCGC
ACCAAGGTGAAAGTTGTGAAGAACAAGGTGGCTCCTCCCTTCAAGGAGGTTGAATTCGATATTCTCTACGGCGAGGGCAT
TTCCCGTGAGGGAGACATCCTTGATCTGGCCGTGGAAAAGGGAATTGTCGACAAGAGCGGCGCCTGGTTCTCTTACGGCA
AGGAAAGGATCGGCCAGGGACGGGAAAACTCCCGCATCTACCTGAAGCAGAATCCGGAGATATGTGCGGAAATAAAGGAA
AAGCTCGCCCAGCAGACAGTACCCTCCGGAGGGGGTGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9M365

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.704

93.393

0.67
  recA Glaesserella parasuis strain SC1401

68.536

96.396

0.661
  recA Bacillus subtilis subsp. subtilis str. 168

67.385

97.598

0.658
  recA Acinetobacter baylyi ADP1

67.702

96.697

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.987

94.895

0.655
  recA Acinetobacter baumannii D1279779

66.261

98.799

0.655
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.081

96.697

0.649
  recA Pseudomonas stutzeri DSM 10701

66.873

96.997

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

96.396

0.646
  recA Vibrio cholerae strain A1552

66.978

96.396

0.646
  recA Neisseria gonorrhoeae MS11

66.875

96.096

0.643
  recA Neisseria gonorrhoeae strain FA1090

66.875

96.096

0.643
  recA Neisseria gonorrhoeae MS11

66.875

96.096

0.643
  recA Helicobacter pylori strain NCTC11637

66.049

97.297

0.643
  recA Helicobacter pylori 26695

66.049

97.297

0.643
  recA Streptococcus mitis SK321

63.609

98.198

0.625
  recA Streptococcus mitis NCTC 12261

63.609

98.198

0.625
  recA Latilactobacillus sakei subsp. sakei 23K

64.688

96.096

0.622
  recA Streptococcus pneumoniae D39

63.58

97.297

0.619
  recA Streptococcus pneumoniae TIGR4

63.58

97.297

0.619
  recA Streptococcus pneumoniae R6

63.58

97.297

0.619
  recA Streptococcus pneumoniae Rx1

63.58

97.297

0.619
  recA Streptococcus pyogenes NZ131

62.963

97.297

0.613
  recA Streptococcus mutans UA159

62.385

98.198

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

98.498

0.61
  recA Lactococcus lactis subsp. cremoris KW2

62.346

97.297

0.607

Multiple sequence alignment