Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VS_RS12240 Genome accession   NC_011753
Coordinates   2783707..2784747 (-) Length   346 a.a.
NCBI ID   WP_009847633.1    Uniprot ID   A0A2N7I0P3
Organism   Vibrio atlanticus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2778707..2789747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS12220 (VS_2592) - 2778825..2779658 (+) 834 WP_029223077.1 sugar ABC transporter permease -
  VS_RS12225 (VS_2593) - 2779668..2781506 (+) 1839 WP_012604767.1 glycoside hydrolase family 13 protein -
  VS_RS12230 (VS_2594) - 2781490..2782551 (+) 1062 WP_012604768.1 ROK family protein -
  VS_RS12235 (VS_2595) - 2782606..2783406 (+) 801 WP_009847632.1 TrmB family transcriptional regulator -
  VS_RS12240 (VS_2596) recA 2783707..2784747 (-) 1041 WP_009847633.1 recombinase RecA Machinery gene
  VS_RS12245 (VS_2597) pncC 2784887..2785381 (-) 495 WP_029223075.1 nicotinamide-nucleotide amidase -
  VS_RS12250 (VS_2598) mutS 2785506..2788067 (+) 2562 WP_012604771.1 DNA mismatch repair protein MutS -
  VS_RS12255 (VS_2599) rpoS 2788212..2789192 (-) 981 WP_041472911.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37256.77 Da        Isoelectric Point: 4.9843

>NTDB_id=32290 VS_RS12240 WP_009847633.1 2783707..2784747(-) (recA) [Vibrio atlanticus]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKGAEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=32290 VS_RS12240 WP_009847633.1 2783707..2784747(-) (recA) [Vibrio atlanticus]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCAATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATCGCA
GCAGCACAGAAAGTGGGCAAAACGTGTGCATTCGTCGATGCCGAGCACGCACTAGACCCTATCTACGCTCAAAAGTTGGG
TGTTGATATCGATGCACTTCTTGTTTCTCAACCAGATACGGGTGAGCAAGCGCTTGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCTATCGACGTTCTTGTTATTGACTCAGTAGCAGCACTAACACCTAAAGCAGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTGACTGGTAACCTCAAGCAGTCTAACTGTAT
GGCCATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACAACAACAGGTGGTAACGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGCGCGATTAAAGATGGTGATGAAGTTGTTGGTAACGAA
ACTCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATCCTTTACGGCAAGGGCTT
CAACCGCGAAGGTGAGCTTATCGACTTAGGTGTTAAGAATAAGCTAGTAGAAAAAGCAGGCGCTTGGTACAGCTACAAAG
GCGACAAGATCGGCCAAGGTAAAGCAAACGCTGGTAAATACCTGCGTGAAAACCCAGAAGTAGCTCTAGAAATTGATACT
AAACTTCGTGAGTTACTGCTAACTCCTGCTGTGCTTGAAGAGAAAGGTGCAGAGAAGGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7I0P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

76.133

95.665

0.728
  recA Acinetobacter baumannii D1279779

72.464

99.711

0.723
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae strain FA1090

66.954

100

0.673
  recA Glaesserella parasuis strain SC1401

67.151

99.422

0.668
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.04

0.65
  recA Streptococcus mutans UA159

58.453

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus pneumoniae D39

61.92

93.353

0.578
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Streptococcus pneumoniae Rx1

61.92

93.353

0.578
  recA Streptococcus pneumoniae R6

61.92

93.353

0.578
  recA Streptococcus pneumoniae TIGR4

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555

Multiple sequence alignment