Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VS_RS12255 Genome accession   NC_011753
Coordinates   2788212..2789192 (-) Length   326 a.a.
NCBI ID   WP_041472911.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783212..2794192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS12240 (VS_2596) recA 2783707..2784747 (-) 1041 WP_009847633.1 recombinase RecA Machinery gene
  VS_RS12245 (VS_2597) pncC 2784887..2785381 (-) 495 WP_029223075.1 nicotinamide-nucleotide amidase -
  VS_RS12250 (VS_2598) mutS 2785506..2788067 (+) 2562 WP_012604771.1 DNA mismatch repair protein MutS -
  VS_RS12255 (VS_2599) rpoS 2788212..2789192 (-) 981 WP_041472911.1 RNA polymerase sigma factor RpoS Regulator
  VS_RS12260 (VS_2600) nlpD 2789291..2790205 (-) 915 WP_041472912.1 murein hydrolase activator NlpD -
  VS_RS12265 (VS_2601) - 2790241..2790867 (-) 627 WP_009847638.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VS_RS12270 (VS_2602) surE 2790868..2791611 (-) 744 WP_041472913.1 5'/3'-nucleotidase SurE -
  VS_RS12275 (VS_2603) truD 2791688..2792734 (-) 1047 WP_041472914.1 tRNA pseudouridine(13) synthase TruD -
  VS_RS12280 (VS_2604) ispF 2792757..2793236 (-) 480 WP_041472915.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VS_RS12285 (VS_2605) ispD 2793239..2793940 (-) 702 WP_009847642.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37223.40 Da        Isoelectric Point: 5.2708

>NTDB_id=32292 VS_RS12255 WP_041472911.1 2788212..2789192(-) (rpoS) [Vibrio atlanticus]
MSISNAVTKEEFDLSQATTEQEALGKAKRTVTKKTEAKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=32292 VS_RS12255 WP_041472911.1 2788212..2789192(-) (rpoS) [Vibrio atlanticus]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAGCCAAGCAACCACGGAACAGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAGACTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGACCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GTTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGCACCGCAAGAGAACTTTCACAAAAACTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGACAAACCTGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCTATTGGTGGTGATGGTGAGAAAGCGCTACTGGATATAATTCCGGACATCAACAACTCAGACCCTGAG
GTTTCAACTCAAGATAGCGATATTAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTAACTCGTGAAC
GCGTTCGCCAAATCCAAGTTGAAGGTCTGCGTCGTCTACGTGAGATTTTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.178

100

0.831

Multiple sequence alignment