Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UTEX3055_RS04185 Genome accession   NZ_CP033061
Coordinates   815196..816269 (+) Length   357 a.a.
NCBI ID   WP_126147105.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 810196..821269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS04160 - 810532..811494 (-) 963 WP_126147103.1 bile acid:sodium symporter family protein -
  UTEX3055_RS04165 msrB 811533..812141 (+) 609 WP_011243473.1 peptide-methionine (R)-S-oxide reductase MsrB -
  UTEX3055_RS04170 - 812132..813265 (-) 1134 WP_011243474.1 MlaD family protein -
  UTEX3055_RS04175 - 813293..814084 (-) 792 WP_238154262.1 ATP-binding cassette domain-containing protein -
  UTEX3055_RS04180 - 814521..815081 (+) 561 WP_126147104.1 DUF3611 family protein -
  UTEX3055_RS04185 recA 815196..816269 (+) 1074 WP_126147105.1 recombinase RecA Machinery gene
  UTEX3055_RS14685 - 816713..816877 (-) 165 WP_011243478.1 hypothetical protein -
  UTEX3055_RS04190 pgeF 817034..817813 (-) 780 WP_011243479.1 peptidoglycan editing factor PgeF -
  UTEX3055_RS04195 - 817859..818629 (+) 771 WP_126147106.1 biotin--[acetyl-CoA-carboxylase] ligase -
  UTEX3055_RS04200 - 818714..819757 (+) 1044 WP_126147107.1 M23 family metallopeptidase -
  UTEX3055_RS04205 psb27 820111..820512 (-) 402 WP_011377542.1 photosystem II protein Psb27 -
  UTEX3055_RS04210 - 820576..820803 (-) 228 WP_011377541.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37983.39 Da        Isoelectric Point: 5.5176

>NTDB_id=321020 UTEX3055_RS04185 WP_126147105.1 815196..816269(+) (recA) [Synechococcus elongatus UTEX 3055]
MASKSDAIAPEKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETISTGALTLDLALGGGLPKGRIIEVYGPESSGKTTL
TLHAIAEVQKQGGIAAFVDAEHALDPVYATSVGVDIDNLLISQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALVPRAEI
EGEMGDAQVGLQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGT
EEYGTRAKVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITHLEEHPDF
RATVEQQVREKLALGAQVSANTVGAAAPAKADEDADS

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=321020 UTEX3055_RS04185 WP_126147105.1 815196..816269(+) (recA) [Synechococcus elongatus UTEX 3055]
ATGGCTAGCAAATCTGACGCGATCGCTCCAGAGAAGGAAAAAGCCCTAAATCTCGTGCTCAGTCAGATTGAGCGCAATTT
CGGCAAGGGGGCAATCATGCGCCTTGGCGATGCGGCTCGACTGCGGGTCGAAACGATTTCCACGGGTGCGCTGACGCTTG
ATTTAGCCCTGGGCGGTGGTCTCCCCAAGGGGCGGATTATCGAGGTCTACGGCCCTGAAAGCTCGGGTAAAACTACGCTC
ACGCTCCACGCGATCGCAGAAGTCCAAAAGCAGGGTGGGATCGCCGCTTTTGTAGACGCGGAGCATGCTCTCGACCCGGT
TTACGCCACCTCCGTAGGGGTGGACATTGACAATCTGCTGATCTCGCAGCCTGACACCGGCGAGATGGCCCTCGAGATTG
TCGACCAGCTCGTGCGATCGGCCGCCGTCGATATCGTCGTGATCGACTCGGTAGCAGCCCTCGTTCCCCGTGCCGAAATT
GAAGGGGAAATGGGCGACGCCCAAGTAGGTCTGCAGGCTCGCCTGATGAGCCAAGCGATGCGGAAAATTACAGGCAACAT
CGGCAAATCGGGTTGCACGGTTATCTTCCTCAACCAATTGCGCCAAAAAATCGGTGTCACCTACGGCAGCCCCGAGACCA
CCACAGGCGGTCAGGCCCTGAAGTTCTATGCGTCCGTCCGCTTAGATATTCGCCGCATTCAAACCCTGAAGAAGGGCACA
GAAGAGTACGGCACCCGTGCCAAGGTCAAGGTCGTCAAGAACAAAGTGGCACCGCCCTTCCGCATTGCTGAGTTCGACAT
TCTCTTCGGCAAGGGCATTTCTACCCTCGGTTGCCTGGTGGACTTGGCAGAAGAAACCGGCGTCATCCTGCGCAAAGGCG
CCTGGTACAGCTACAACGGCGACAACATCGGCCAAGGGCGCGACAACACAATCACCCACTTGGAAGAGCATCCTGACTTC
CGGGCAACGGTCGAACAGCAGGTGCGCGAAAAATTGGCCCTCGGGGCTCAAGTTTCGGCCAACACAGTGGGAGCAGCAGC
ACCCGCCAAAGCGGATGAAGACGCTGATAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.689

97.199

0.619
  recA Acinetobacter baylyi ADP1

66.77

90.196

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.157

92.997

0.597
  recA Acinetobacter baumannii D1279779

66.149

90.196

0.597
  recA Glaesserella parasuis strain SC1401

58.974

98.319

0.58
  recA Neisseria gonorrhoeae MS11

62.037

90.756

0.563
  recA Neisseria gonorrhoeae strain FA1090

62.037

90.756

0.563
  recA Neisseria gonorrhoeae MS11

62.037

90.756

0.563
  recA Streptococcus pneumoniae Rx1

58.309

96.078

0.56
  recA Streptococcus pneumoniae D39

58.309

96.078

0.56
  recA Streptococcus pneumoniae R6

58.309

96.078

0.56
  recA Streptococcus pneumoniae TIGR4

58.309

96.078

0.56
  recA Vibrio cholerae strain A1552

61.491

90.196

0.555
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

90.196

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

60.923

91.036

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

89.636

0.552
  recA Helicobacter pylori strain NCTC11637

58.683

93.557

0.549
  recA Helicobacter pylori 26695

58.683

93.557

0.549
  recA Streptococcus mutans UA159

55.682

98.599

0.549
  recA Streptococcus mitis SK321

58.036

94.118

0.546
  recA Streptococcus mitis NCTC 12261

57.738

94.118

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.227

94.958

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.259

90.756

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.53

92.997

0.535
  recA Streptococcus pyogenes NZ131

58.104

91.597

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.362

91.317

0.524

Multiple sequence alignment