Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D9842_RS04520 Genome accession   NZ_CP033043
Coordinates   960598..961638 (+) Length   346 a.a.
NCBI ID   WP_121661470.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 955598..966638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS04495 - 956246..956503 (+) 258 WP_121661466.1 DUF3243 domain-containing protein -
  D9842_RS04500 - 956656..957447 (+) 792 WP_098796361.1 DUF3388 domain-containing protein -
  D9842_RS04505 - 957464..958336 (+) 873 WP_162987291.1 helix-turn-helix domain-containing protein -
  D9842_RS04510 pgsA 958457..959035 (+) 579 WP_121661468.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D9842_RS04515 cinA 959048..960298 (+) 1251 WP_121661469.1 competence/damage-inducible protein A Machinery gene
  D9842_RS04520 recA 960598..961638 (+) 1041 WP_121661470.1 recombinase RecA Machinery gene
  D9842_RS04525 ltrA 962204..963460 (+) 1257 WP_121664937.1 group II intron reverse transcriptase/maturase -
  D9842_RS04530 rny 963980..965542 (+) 1563 WP_285842646.1 ribonuclease Y -
  D9842_RS04535 - 965669..966463 (+) 795 WP_121661472.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37634.88 Da        Isoelectric Point: 4.9932

>NTDB_id=320599 D9842_RS04520 WP_121661470.1 960598..961638(+) (recA) [Metabacillus litoralis strain Bac94]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTVPSGSLALDTALGIGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENPEIRLEIQGK
IRKHYGLDEEVTAPDESQEEMNLLGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=320599 D9842_RS04520 WP_121661470.1 960598..961638(+) (recA) [Metabacillus litoralis strain Bac94]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGATCTATTATGAAATT
AGGAGAGCAAACAGATCGAAAGGTATCAACTGTTCCAAGTGGTTCATTAGCACTTGATACTGCTTTAGGTATAGGTGGGT
ATCCTCGTGGTAGAATCATAGAAATCTATGGTCCTGAAAGCTCTGGTAAAACAACTGTTGCACTACATGCCATCGCTGAG
GTTCAACAGCAAGGTGGTCAAGCAGCATTTATTGATGCTGAACACGCACTTGACCCTGTATATGCACAAAAACTTGGTGT
AAACATCGATGAATTACTACTTTCACAACCTGATACTGGTGAACAGGCACTAGAAATTGCAGAAGCTCTTGTACGAAGTG
GCGCCGTTGATATTTTAGTTATTGACTCGGTTGCAGCGTTAGTACCTAAAGCTGAAATTGAAGGTGAGATGGGTGATTCA
CATGTCGGTCTTCAAGCAAGACTGATGTCTCAAGCATTACGTAAATTATCAGGTGCTATAAATAAATCTAAAACAATTGC
TATTTTCATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGAAACCCTGAGACAACTCCAGGTGGTCGTGCTTTAA
AATTCTATTCTTCTGTTCGTTTAGAAGTTCGCCGTGCTGAAACACTTAAACAAGGTAATGATATGGTCGGAAATAAAACT
AAAATTAAAGTAGTTAAAAATAAGGTGGCACCTCCTTTCAAAGTAGCAGAAGTTGATATTATGTACGGTGAAGGAATTTC
AAAAGAAGGCGAAATTATCGATATGGGTTCGGATTTGGATATTGTTCAAAAGAGCGGTTCTTGGTATTCGTATAATGAAG
AACGTTTAGGTCAAGGTCGAGAAAATGCCAAACAATTCCTAAAGGAAAACCCTGAAATACGTTTAGAAATACAAGGTAAA
ATCCGTAAACATTATGGTCTAGACGAAGAAGTTACTGCACCAGATGAAAGTCAAGAAGAGATGAATTTATTAGGGGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

92.378

94.798

0.876
  recA Latilactobacillus sakei subsp. sakei 23K

74.709

99.422

0.743
  recA Streptococcus mitis SK321

66.854

100

0.688
  recA Streptococcus pneumoniae D39

69.706

98.266

0.685
  recA Streptococcus pneumoniae TIGR4

69.706

98.266

0.685
  recA Streptococcus pneumoniae R6

69.706

98.266

0.685
  recA Streptococcus pneumoniae Rx1

69.706

98.266

0.685
  recA Streptococcus mutans UA159

70.482

95.954

0.676
  recA Streptococcus mitis NCTC 12261

70.606

95.376

0.673
  recA Streptococcus pyogenes NZ131

70.122

94.798

0.665
  recA Lactococcus lactis subsp. cremoris KW2

67.857

97.11

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.955

95.665

0.621
  recA Neisseria gonorrhoeae MS11

64.955

95.665

0.621
  recA Neisseria gonorrhoeae MS11

64.955

95.665

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.549

94.798

0.621
  recA Helicobacter pylori 26695

63.05

98.555

0.621
  recA Helicobacter pylori strain NCTC11637

63.05

98.555

0.621
  recA Acinetobacter baumannii D1279779

61.383

100

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.977

0.61
  recA Vibrio cholerae strain A1552

65.732

92.775

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

92.775

0.61
  recA Acinetobacter baylyi ADP1

60.756

99.422

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.509

0.604
  recA Glaesserella parasuis strain SC1401

63.323

92.197

0.584
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.486

0.575

Multiple sequence alignment