Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TMZ1T_RS03460 Genome accession   NC_011662
Coordinates   794020..795057 (-) Length   345 a.a.
NCBI ID   WP_004306766.1    Uniprot ID   N6XVD0
Organism   Thauera aminoaromatica     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789020..800057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS03430 (Tmz1t_0705) hprK 789488..790435 (-) 948 WP_004306747.1 HPr(Ser) kinase/phosphatase -
  TMZ1T_RS03435 (Tmz1t_0706) ptsN 790404..790889 (-) 486 WP_012584594.1 PTS IIA-like nitrogen regulatory protein PtsN -
  TMZ1T_RS03440 (Tmz1t_0707) hpf 791026..791349 (-) 324 WP_004306751.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  TMZ1T_RS03445 (Tmz1t_0708) rpoN/rpoN1 791368..792822 (-) 1455 WP_004306755.1 RNA polymerase factor sigma-54 Machinery gene
  TMZ1T_RS03450 (Tmz1t_0709) lptB 792845..793567 (-) 723 WP_004306760.1 LPS export ABC transporter ATP-binding protein -
  TMZ1T_RS03455 (Tmz1t_0710) recX 793554..794003 (-) 450 WP_004306763.1 recombination regulator RecX -
  TMZ1T_RS03460 (Tmz1t_0711) recA 794020..795057 (-) 1038 WP_004306766.1 recombinase RecA Machinery gene
  TMZ1T_RS03465 (Tmz1t_0712) pncC 795254..795742 (-) 489 WP_012584595.1 nicotinamide-nucleotide amidase -
  TMZ1T_RS03470 (Tmz1t_0713) - 795747..796229 (-) 483 WP_004306772.1 phosphatidylglycerophosphatase A -
  TMZ1T_RS03475 (Tmz1t_0714) thiL 796261..797220 (-) 960 WP_012584596.1 thiamine-phosphate kinase -
  TMZ1T_RS03480 (Tmz1t_0715) - 797341..797877 (-) 537 WP_004306779.1 SCP2 domain-containing protein -
  TMZ1T_RS03485 (Tmz1t_0716) - 797914..798810 (-) 897 WP_004306781.1 U32 family peptidase -
  TMZ1T_RS03490 (Tmz1t_0717) - 798928..799944 (-) 1017 WP_012584597.1 peptidase U32 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36869.32 Da        Isoelectric Point: 5.3374

>NTDB_id=32005 TMZ1T_RS03460 WP_004306766.1 794020..795057(-) (recA) [Thauera aminoaromatica]
MDENKAKALSAALSQIEKQFGKGSIMRMGDGSIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVDIEDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYKGDKIGQGKDNSREFLRANPVLAREIE
NKVRVAVGLPELPPAAASAPAPAEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=32005 TMZ1T_RS03460 WP_004306766.1 794020..795057(-) (recA) [Thauera aminoaromatica]
ATGGACGAAAACAAGGCCAAAGCCCTCTCCGCGGCGCTGTCGCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCATGCG
CATGGGCGACGGCAGCATCGAGCGCGACATCCAGACCGTCTCCACCGGCTCGCTCGGACTCGACATCGCGCTCGGGCTCG
GCGGTCTGCCGCGCGGTCGGGTGGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACGCTCACCCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCGGAAAAACT
CGGCGTCGACATCGAGGATCTGCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTGGACATCGTGGTCATCGACTCGGTCGCCGCGCTCACCCCCAAGGCCGAGATCGAGGGCGAGATGGGC
GACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCACTGCGCAAGCTCACCGCCAACATCAAGCGCACCAATAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGAAGGGTGACGAGGTGGTCGGCTCC
GAGACCCGCGTCAAGGTGGTCAAGAACAAGGTCTCGCCACCGTTCAAGGAAGCCCACTTCGACATCCTTTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTCGAGCACAAGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACA
AGGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCGCCAACCCGGTGCTGGCCCGCGAGATCGAG
AACAAGGTGCGGGTCGCGGTCGGCCTGCCCGAGCTGCCGCCCGCCGCCGCGTCCGCCCCGGCGCCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6XVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.357

97.391

0.783
  recA Pseudomonas stutzeri DSM 10701

75

93.913

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.299

95.942

0.684
  recA Vibrio cholerae strain A1552

71.299

95.942

0.684
  recA Acinetobacter baumannii D1279779

72.531

93.913

0.681
  recA Neisseria gonorrhoeae MS11

71.125

95.362

0.678
  recA Neisseria gonorrhoeae MS11

71.125

95.362

0.678
  recA Neisseria gonorrhoeae strain FA1090

71.125

95.362

0.678
  recA Acinetobacter baylyi ADP1

72.222

93.913

0.678
  recA Glaesserella parasuis strain SC1401

70.186

93.333

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.854

95.072

0.626
  recA Helicobacter pylori 26695

63.343

98.841

0.626
  recA Helicobacter pylori strain NCTC11637

64.458

96.232

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.545

95.652

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

94.493

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.349

96.232

0.6
  recA Streptococcus mitis SK321

60.059

97.971

0.588
  recA Streptococcus mutans UA159

60.479

96.812

0.586
  recA Streptococcus mitis NCTC 12261

60.79

95.362

0.58
  recA Streptococcus pneumoniae Rx1

60.486

95.362

0.577
  recA Streptococcus pneumoniae D39

60.486

95.362

0.577
  recA Streptococcus pneumoniae R6

60.486

95.362

0.577
  recA Streptococcus pneumoniae TIGR4

60.486

95.362

0.577
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.783

0.568
  recA Streptococcus pyogenes NZ131

59.394

95.652

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

94.493

0.551

Multiple sequence alignment