Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AFLV_RS08080 Genome accession   NC_011567
Coordinates   1533212..1534249 (-) Length   345 a.a.
NCBI ID   WP_041638422.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus WK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528212..1539249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS08060 (Aflv_1526) - 1529156..1530115 (-) 960 WP_012575118.1 dipeptidase -
  AFLV_RS08065 (Aflv_1527) spoVS 1530164..1530424 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  AFLV_RS08070 (Aflv_1528) - 1530554..1531348 (-) 795 WP_041638419.1 TIGR00282 family metallophosphoesterase -
  AFLV_RS08075 (Aflv_1529) rny 1531446..1533002 (-) 1557 WP_041638421.1 ribonuclease Y -
  AFLV_RS08080 (Aflv_1530) recA 1533212..1534249 (-) 1038 WP_041638422.1 recombinase RecA Machinery gene
  AFLV_RS08085 (Aflv_1531) cinA 1534357..1535589 (-) 1233 WP_012575122.1 competence/damage-inducible protein A Machinery gene
  AFLV_RS08090 (Aflv_1532) pgsA 1535612..1536190 (-) 579 WP_041638424.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AFLV_RS08095 (Aflv_1533) - 1536220..1537080 (-) 861 WP_012575124.1 RodZ domain-containing protein -
  AFLV_RS08100 (Aflv_1534) - 1537090..1537881 (-) 792 WP_006323425.1 DUF3388 domain-containing protein -
  AFLV_RS08105 (Aflv_1535) - 1538065..1538313 (-) 249 WP_006323424.1 DUF3243 domain-containing protein -
  AFLV_RS08110 (Aflv_1536) - 1538379..1539092 (-) 714 WP_012575126.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37498.77 Da        Isoelectric Point: 5.1958

>NTDB_id=31841 AFLV_RS08080 WP_041638422.1 1533212..1534249(-) (recA) [Anoxybacillus flavithermus WK1]
MNDRQAALEQALKQIEKQFGKGSIMKLGEQTDRQISTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPVYAEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKT
KIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYKDERLGQGRENAKQFLKENPHIMEEIARE
IRQHYGITTGASATPVREDDLDFLE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=31841 AFLV_RS08080 WP_041638422.1 1533212..1534249(-) (recA) [Anoxybacillus flavithermus WK1]
TTGAACGATCGTCAAGCAGCATTAGAACAGGCGTTAAAGCAAATTGAGAAACAGTTTGGAAAAGGTTCCATTATGAAGCT
AGGAGAGCAAACAGATCGTCAAATTTCGACTGTATCAAGCGGCTCTCTTGCACTTGATATTGCGCTTGGAGTAGGAGGAT
ATCCGCGCGGGCGTATTATTGAAATTTATGGTCCAGAATCTTCGGGTAAAACGACAGTTGCTCTTCATGCAATTGCTGAA
GTACAAAAGCAAGGTGGTCAAGCGGCGTTTATTGATGCAGAACACGCTTTAGATCCTGTTTACGCTGAAAAGTTAGGTGT
TAATATTGATGAATTGTTGCTTTCACAGCCTGATACAGGAGAGCAAGCGTTAGAAATTGCTGAAGCGCTTGTGCGCAGTG
GAGCGGTTGACATTATTGTTATTGACTCCGTTGCAGCCCTTGTTCCGAAAGCAGAAATTGAAGGGGAAATGGGCGATGCT
CACGTTGGATTACAAGCACGGCTCATGTCCCAAGCGCTACGTAAATTATCAGGCGCCATCAACAAATCGAAAACAATCGC
CATCTTCATTAACCAAATAAGGGAAAAAGTGGGGGTTATGTTCGGGAACCCCGAGACAACTCCTGGTGGTCGCGCATTGA
AGTTTTATGCGTCTGTTCGTTTAGAAGTGCGTCGTGCTGAACAAATCAAGCAAGGTAACGACATGGTTGGAAACAAAACG
AAAATTAAAGTCGTTAAAAATAAAGTGGCGCCACCATTTAAAACCGCAGATGTAGATATTATGTATGGGGAAGGGATTTC
AAAAGAAGGCGAAATTATTGATATGGGTGCTGAACTCGACATCATCCAAAAAAGCGGTGCTTGGTATTCATACAAAGATG
AGAGACTGGGACAAGGACGAGAAAACGCGAAACAATTTTTAAAAGAAAATCCACATATCATGGAAGAAATTGCACGTGAA
ATTCGCCAACATTATGGCATTACGACAGGTGCATCAGCGACACCTGTACGTGAAGATGATTTAGACTTCTTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.379

94.783

0.838
  recA Latilactobacillus sakei subsp. sakei 23K

74.709

99.71

0.745
  recA Streptococcus mitis NCTC 12261

69.591

99.13

0.69
  recA Streptococcus mitis SK321

69.388

99.42

0.69
  recA Streptococcus pneumoniae R6

71.386

96.232

0.687
  recA Streptococcus pneumoniae Rx1

71.386

96.232

0.687
  recA Streptococcus pneumoniae D39

71.386

96.232

0.687
  recA Streptococcus pneumoniae TIGR4

71.386

96.232

0.687
  recA Streptococcus pyogenes NZ131

69.605

95.362

0.664
  recA Streptococcus mutans UA159

69.091

95.652

0.661
  recA Lactococcus lactis subsp. cremoris KW2

68.997

95.362

0.658
  recA Ralstonia pseudosolanacearum GMI1000

66.768

95.072

0.635
  recA Pseudomonas stutzeri DSM 10701

62.757

98.841

0.62
  recA Acinetobacter baumannii D1279779

63.314

97.971

0.62
  recA Neisseria gonorrhoeae MS11

65.443

94.783

0.62
  recA Neisseria gonorrhoeae MS11

65.443

94.783

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.783

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.783

0.614
  recA Acinetobacter baylyi ADP1

60.807

100

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

93.043

0.612
  recA Vibrio cholerae strain A1552

65.732

93.043

0.612
  recA Helicobacter pylori strain NCTC11637

61.047

99.71

0.609
  recA Helicobacter pylori 26695

61.047

99.71

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

95.072

0.609
  recA Glaesserella parasuis strain SC1401

65

92.754

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.924

91.594

0.586

Multiple sequence alignment