Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D11S_RS03880 Genome accession   NC_013416
Coordinates   744546..745148 (+) Length   200 a.a.
NCBI ID   WP_005542695.1    Uniprot ID   A0A142G1C2
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739546..750148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS03855 (D11S_0816) fecD 739942..740925 (-) 984 WP_005546723.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  D11S_RS03860 (D11S_0817) fecC 740925..741914 (-) 990 WP_005546721.1 iron-dicitrate ABC transporter permease FecC -
  D11S_RS03865 (D11S_0818) - 741914..742807 (-) 894 WP_005546719.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  D11S_RS03870 (D11S_0819) - 742877..743947 (-) 1071 WP_005546716.1 metallophosphoesterase -
  D11S_RS03875 (D11S_02480) - 744132..744461 (+) 330 WP_005546714.1 YbaB/EbfC family nucleoid-associated protein -
  D11S_RS03880 (D11S_0821) recR 744546..745148 (+) 603 WP_005542695.1 recombination mediator RecR Machinery gene
  D11S_RS03885 (D11S_0822) - 745180..747117 (+) 1938 WP_005546712.1 DNA topoisomerase III -
  D11S_RS03890 (D11S_0824) secG 747278..747628 (+) 351 WP_005546710.1 preprotein translocase subunit SecG -
  D11S_RS11505 (D11S_0826) - 748008..748691 (+) 684 WP_005546709.1 integrase arm-type DNA-binding domain-containing protein -
  D11S_RS11435 - 748609..748853 (+) 245 Protein_746 helix-turn-helix domain-containing protein -
  D11S_RS03910 (D11S_0828) - 749546..749800 (+) 255 WP_012820921.1 EexN family lipoprotein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21897.08 Da        Isoelectric Point: 6.2212

>NTDB_id=31841 D11S_RS03880 WP_005542695.1 744546..745148(+) (recR) [Aggregatibacter actinomycetemcomitans D11S-1]
MQTSPLLENLIESLRVLPGVGPKSAQRMAYHLLQRNRSGGMRLAQGLTEAMSKIGHCEHCRTFTEEDVCNICSNPRRQNS
GLLCVVETPADILAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLQTESFNEVILATNPTVEGDATANYIAEL
CLQQNVKVSRIAHGIPVGGELEMVDGTTLTHSFLGRREIG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=31841 D11S_RS03880 WP_005542695.1 744546..745148(+) (recR) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGCAAACCAGCCCCTTGTTAGAAAATCTGATCGAAAGTTTACGCGTATTGCCGGGCGTCGGTCCGAAATCCGCGCAACG
TATGGCGTATCATTTATTGCAACGCAATCGCAGCGGCGGAATGCGCTTGGCGCAAGGGCTGACGGAAGCGATGTCGAAAA
TCGGGCATTGTGAACATTGCCGCACTTTTACGGAAGAAGATGTGTGCAACATTTGTAGTAATCCACGCCGTCAAAATTCG
GGCTTGCTTTGCGTGGTGGAAACGCCGGCGGATATTCTTGCTATTGAGCAAACAGGGCAGTTTTCCGGGCGTTATTTCGT
GCTGATGGGGCATTTGTCGCCGCTGGACGGTATCGGCCCGCGCGAAATCGGCTTGGATTTGTTGCAAAAACGCCTGCAAA
CGGAATCTTTCAATGAAGTGATTTTAGCCACTAACCCGACGGTAGAAGGCGACGCCACAGCAAACTACATTGCGGAACTT
TGCCTACAACAAAACGTCAAAGTCAGCCGTATTGCCCACGGCATTCCGGTGGGTGGCGAATTGGAAATGGTGGACGGCAC
CACGCTGACCCATTCCTTCTTAGGTCGCCGTGAAATCGGCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G1C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435

Multiple sequence alignment