Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D7D50_RS03485 Genome accession   NZ_CP032620
Coordinates   645432..646574 (+) Length   380 a.a.
NCBI ID   WP_117744824.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640432..651574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS03465 (D7D50_03465) ruvA 641501..642094 (+) 594 WP_120701478.1 Holliday junction branch migration protein RuvA -
  D7D50_RS03470 (D7D50_03470) - 642104..642670 (+) 567 WP_120701479.1 DNA-3-methyladenine glycosylase I -
  D7D50_RS03475 (D7D50_03475) - 642722..643759 (-) 1038 WP_120701480.1 S66 family peptidase -
  D7D50_RS03480 (D7D50_03480) cinA 644117..645385 (+) 1269 WP_120701481.1 competence/damage-inducible protein A Machinery gene
  D7D50_RS03485 (D7D50_03485) recA 645432..646574 (+) 1143 WP_117744824.1 recombinase RecA Machinery gene
  D7D50_RS03490 (D7D50_03490) spx 646662..647060 (+) 399 WP_006595399.1 transcriptional regulator Spx -
  D7D50_RS03495 (D7D50_03495) - 647244..647837 (+) 594 WP_120701482.1 SP0191 family lipoprotein -
  D7D50_RS03500 (D7D50_03500) - 647848..648399 (+) 552 WP_120701483.1 hypothetical protein -
  D7D50_RS03505 (D7D50_03505) - 648541..648807 (+) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  D7D50_RS03510 (D7D50_03510) ruvX 648807..649226 (+) 420 WP_117744821.1 Holliday junction resolvase RuvX -
  D7D50_RS03515 (D7D50_03515) - 649244..649555 (+) 312 WP_006595405.1 DUF1292 domain-containing protein -
  D7D50_RS03520 (D7D50_03520) - 649931..651178 (+) 1248 WP_120701484.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40910.52 Da        Isoelectric Point: 4.7230

>NTDB_id=317136 D7D50_RS03485 WP_117744824.1 645432..646574(+) (recA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHQVRVRFGLIDDDTAVVAQDEVAESSLVEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=317136 D7D50_RS03485 WP_117744824.1 645432..646574(+) (recA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCAAAGAAATTTGGAGATGAGCGTGAAAAAGCCCTCAATGATGCCCT
GAAGTTGATCGAAAAAGACTTTGGTAAGGGTTCCATCATGCGTCTGGGCGAACGCGCAGAACAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCTCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAGGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCAGGTAAAACAACCGTTGCCCTTCATGCAGTAGCGCAAGCACAAAAAGAAGGAGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCTTGGACCCATCTTATGCAGCAGCTCTCGGGGTCAATATTGATGAGCTCCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATCGCGGGTAAATTGATCGACTCAGGTGCCGTTGATTTGGTCGTGATCGACTCTGTTGCT
GCTTTAGTACCACGCGCAGAAATCGATGGAGATATCGGTGATAGCCACGTTGGTTTGCAAGCACGGATGATGAGCCAAGC
CATGCGCAAACTCGGAGCTTCGATCAATAAGACCAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACAACTCCTGGTGGTCGTGCCCTTAAATTCTACGCTTCTGTTCGTCTAGACGTCCGTGGA
AATACCCAGATCAAGGGAACGGGTGATCAAAAAGATACCAACGTTGGTAAAGAAACCAAGATCAAGGTTGTGAAAAACAA
GGTAGCTCCACCGTTCAAGGAAGCTATGGTTGAAATCATGTACGGAGAAGGAATTTCACGTACAGGCGAATTGCTGAAAA
TTGCAACAGATCTTGATTTGATCCAAAAAGCTGGTGCTTGGTATTCTTATAACGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGACCATCCAGAAATTTTTGATGAGATTGATCACCAAGTGCGCGTACGCTTTGGTTTGAT
CGATGATGACACTGCTGTAGTTGCACAAGATGAAGTAGCTGAAAGCTCACTTGTTGAAGAAGTAACACTAGATCTTGATG
ATGCAATTGAGATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

91.339

100

0.916
  recA Streptococcus mitis SK321

91.076

100

0.913
  recA Streptococcus pneumoniae Rx1

88.831

100

0.9
  recA Streptococcus pneumoniae D39

88.831

100

0.9
  recA Streptococcus pneumoniae R6

88.831

100

0.9
  recA Streptococcus pneumoniae TIGR4

88.831

100

0.9
  recA Streptococcus mutans UA159

84.755

100

0.863
  recA Streptococcus pyogenes NZ131

85.789

100

0.858
  recA Lactococcus lactis subsp. cremoris KW2

79.31

91.579

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

69.578

87.368

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.656

88.684

0.6
  recA Glaesserella parasuis strain SC1401

60.882

89.474

0.545
  recA Acinetobacter baumannii D1279779

58.857

92.105

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

85

0.537
  recA Acinetobacter baylyi ADP1

59.13

90.789

0.537
  recA Vibrio cholerae strain A1552

62.462

85.526

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.526

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.027

87.105

0.532
  recA Neisseria gonorrhoeae MS11

61.027

87.105

0.532
  recA Neisseria gonorrhoeae MS11

61.027

87.105

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

87.368

0.529
  recA Ralstonia pseudosolanacearum GMI1000

59.337

87.368

0.518
  recA Pseudomonas stutzeri DSM 10701

57.143

90.263

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

87.105

0.503
  recA Helicobacter pylori strain NCTC11637

56.364

86.842

0.489
  recA Helicobacter pylori 26695

56.364

86.842

0.489

Multiple sequence alignment