Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D7D50_RS03480 Genome accession   NZ_CP032620
Coordinates   644117..645385 (+) Length   422 a.a.
NCBI ID   WP_120701481.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 639117..650385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS03460 (D7D50_03460) mutL 639531..641480 (+) 1950 WP_120701477.1 DNA mismatch repair endonuclease MutL -
  D7D50_RS03465 (D7D50_03465) ruvA 641501..642094 (+) 594 WP_120701478.1 Holliday junction branch migration protein RuvA -
  D7D50_RS03470 (D7D50_03470) - 642104..642670 (+) 567 WP_120701479.1 DNA-3-methyladenine glycosylase I -
  D7D50_RS03475 (D7D50_03475) - 642722..643759 (-) 1038 WP_120701480.1 S66 family peptidase -
  D7D50_RS03480 (D7D50_03480) cinA 644117..645385 (+) 1269 WP_120701481.1 competence/damage-inducible protein A Machinery gene
  D7D50_RS03485 (D7D50_03485) recA 645432..646574 (+) 1143 WP_117744824.1 recombinase RecA Machinery gene
  D7D50_RS03490 (D7D50_03490) spx 646662..647060 (+) 399 WP_006595399.1 transcriptional regulator Spx -
  D7D50_RS03495 (D7D50_03495) - 647244..647837 (+) 594 WP_120701482.1 SP0191 family lipoprotein -
  D7D50_RS03500 (D7D50_03500) - 647848..648399 (+) 552 WP_120701483.1 hypothetical protein -
  D7D50_RS03505 (D7D50_03505) - 648541..648807 (+) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  D7D50_RS03510 (D7D50_03510) ruvX 648807..649226 (+) 420 WP_117744821.1 Holliday junction resolvase RuvX -
  D7D50_RS03515 (D7D50_03515) - 649244..649555 (+) 312 WP_006595405.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45183.64 Da        Isoelectric Point: 4.8533

>NTDB_id=317135 D7D50_RS03480 WP_120701481.1 644117..645385(+) (cinA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAGLGIDVYFQTAVGDNADRLLSVLAIARDRSDLVILTGGLGPTEDDLTKQT
LAQFLDRDLTFDPEAMAKLDRFFASRPDHVRTPNNLRQAQIVTGSTPLQNLTGLAVGGMIEVEGVSYVVLPGPPSELKPM
VTDELVPLLATGEKLYSRVLRFFGIGESQLVTVLADVIDSQTDPTLAPYAKTGEVTLRLSTKASSQEQADQKLDHLEQVI
LRHETLDAQSLSQLFYGYGDDNSLAEVAFKLLRERGLTLTAAESLTAGMFQSTLANFSGASAVLPGGFVTYSIEEKSKML
QIPLTELQAHGVVSAHTAERMAAQARLLTGADYGVSLTGVAGPDSLEGHPAGTVFIGIAGPKGVQSIKVNIAGRSRMDVR
KVAVLHAFNLVRKTVLLDENLL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=317135 D7D50_RS03480 WP_120701481.1 644117..645385(+) (cinA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAGCAGAGATCATTGCAGTGGGAACCGAAATTCTCACTGGACAAATTGTCAATACCAATGCGCAATTCTTATCAGA
AAAGTTGGCCGGTCTAGGGATCGACGTTTATTTCCAAACTGCAGTTGGAGATAATGCAGATCGTCTCTTGTCTGTTCTTG
CGATTGCGCGTGATCGAAGTGATCTCGTTATCCTCACAGGAGGTCTCGGACCGACCGAAGACGATCTGACCAAGCAAACC
CTGGCCCAATTCTTGGATAGAGACTTGACCTTTGATCCCGAAGCAATGGCCAAGTTGGATCGCTTCTTTGCCAGTCGGCC
AGACCATGTCCGAACTCCCAATAATCTGAGACAAGCTCAAATAGTAACGGGATCTACGCCCCTCCAAAACCTAACCGGTT
TGGCAGTGGGAGGGATGATCGAAGTAGAGGGCGTTAGCTATGTGGTCTTGCCTGGCCCTCCGAGTGAATTGAAACCTATG
GTTACGGATGAGTTGGTGCCTCTTCTAGCGACAGGAGAGAAGCTCTATTCACGTGTCTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTGGTAACCGTCTTGGCAGATGTGATCGATAGCCAAACAGACCCGACCCTGGCCCCTTATGCCAAGACCGGAG
AAGTCACCTTGCGCTTGTCAACCAAGGCTTCGTCACAAGAACAGGCAGATCAGAAATTGGATCATCTAGAGCAAGTGATT
CTCCGTCATGAGACCTTGGATGCCCAATCCTTGAGCCAGCTCTTCTATGGCTATGGAGATGACAATTCCCTAGCTGAGGT
GGCTTTTAAACTCTTGCGCGAGCGGGGCTTGACCCTGACTGCAGCGGAGAGCTTGACGGCCGGGATGTTCCAGTCGACTC
TGGCTAATTTCTCAGGAGCCTCAGCGGTCTTACCGGGAGGTTTCGTTACCTACAGCATAGAGGAAAAGAGCAAAATGCTC
CAAATTCCCCTAACTGAGTTGCAAGCACATGGAGTGGTCTCTGCCCATACAGCTGAGCGGATGGCGGCACAAGCCCGTCT
CTTAACAGGGGCTGACTATGGAGTCAGTCTGACAGGTGTTGCTGGTCCAGACAGTCTGGAAGGGCATCCAGCAGGGACTG
TCTTTATTGGAATTGCGGGCCCTAAAGGAGTCCAATCGATCAAGGTCAATATCGCTGGCCGGAGTCGTATGGATGTTCGT
AAAGTCGCAGTCCTCCATGCTTTTAATCTGGTACGCAAGACTGTATTATTAGATGAAAATTTGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

72.727

99.052

0.72
  cinA Streptococcus mitis NCTC 12261

71.531

99.052

0.709
  cinA Streptococcus pneumoniae TIGR4

71.531

99.052

0.709
  cinA Streptococcus pneumoniae Rx1

71.531

99.052

0.709
  cinA Streptococcus pneumoniae R6

71.531

99.052

0.709
  cinA Streptococcus pneumoniae D39

71.292

99.052

0.706
  cinA Streptococcus mutans UA159

69.74

100

0.699
  cinA Streptococcus suis isolate S10

54.61

100

0.547
  cinA Bacillus subtilis subsp. subtilis str. 168

46.154

98.578

0.455

Multiple sequence alignment