Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LLB26_RS12895 Genome accession   NZ_CP032435
Coordinates   1722133..1722234 (-) Length   33 a.a.
NCBI ID   WP_228764031.1    Uniprot ID   A0AAJ6MIY4
Organism   Lactococcus cremoris strain B26     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717133..1727234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLB26_RS08440 (LLB26_1669) - 1717478..1717693 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLB26_RS08445 (LLB26_1670) - 1717876..1718652 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLB26_RS08450 (LLB26_1671) - 1718936..1719240 (-) 305 Protein_1678 DNA internalization-related competence protein ComEC/Rec2 -
  LLB26_RS08455 (LLB26_1672) - 1719261..1720151 (-) 891 WP_081213191.1 IS982-like element IS982B family transposase -
  LLB26_RS12890 (LLB26_1673) comEC 1720228..1720737 (-) 510 WP_228764033.1 MBL fold metallo-hydrolase Machinery gene
  LLB26_RS08460 (LLB26_1674) comEC 1720734..1722005 (-) 1272 WP_324187032.1 ComEC/Rec2 family competence protein Machinery gene
  LLB26_RS12895 comEA 1722133..1722234 (-) 102 WP_228764031.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLB26_RS08465 (LLB26_1675) comEA 1722231..1722713 (-) 483 WP_237025447.1 SLBB domain-containing protein Machinery gene
  LLB26_RS08470 (LLB26_1676) - 1722844..1724205 (-) 1362 WP_014572203.1 ABC transporter permease -
  LLB26_RS08475 (LLB26_1677) - 1724202..1725134 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLB26_RS08480 (LLB26_1678) - 1725240..1725638 (-) 399 WP_011676775.1 hypothetical protein -
  LLB26_RS08485 (LLB26_1679) - 1725755..1726314 (-) 560 Protein_1687 N-acetyltransferase family protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3658.14 Da        Isoelectric Point: 4.4911

>NTDB_id=315895 LLB26_RS12895 WP_228764031.1 1722133..1722234(-) (comEA) [Lactococcus cremoris strain B26]
MKNGDFKSIEDLGKVSGFGDKTLEKLKDEISID

Nucleotide


Download         Length: 102 bp        

>NTDB_id=315895 LLB26_RS12895 WP_228764031.1 1722133..1722234(-) (comEA) [Lactococcus cremoris strain B26]
ATGAAAAATGGTGACTTTAAATCAATAGAGGATTTGGGTAAAGTATCTGGCTTTGGGGATAAAACATTAGAAAAATTGAA
AGATGAGATTTCTATTGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

100

100

1
  comEA/celA/cilE Streptococcus mitis SK321

61.29

93.939

0.576
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

61.29

93.939

0.576
  comEA/celA/cilE Streptococcus pneumoniae Rx1

61.29

93.939

0.576
  comEA/celA/cilE Streptococcus pneumoniae D39

61.29

93.939

0.576
  comEA/celA/cilE Streptococcus pneumoniae R6

61.29

93.939

0.576
  comEA/celA/cilE Streptococcus mitis NCTC 12261

61.29

93.939

0.576
  comE Neisseria gonorrhoeae MS11

54.839

93.939

0.515
  comE Neisseria gonorrhoeae MS11

54.839

93.939

0.515
  comE Neisseria gonorrhoeae MS11

54.839

93.939

0.515
  comE Neisseria gonorrhoeae MS11

54.839

93.939

0.515
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.125

96.97

0.515
  comEA/comE1 Glaesserella parasuis strain SC1401

53.125

96.97

0.515
  comEA Staphylococcus aureus N315

51.613

93.939

0.485
  comEA Bacillus subtilis subsp. subtilis str. 168

51.613

93.939

0.485
  comEA Staphylococcus aureus MW2

51.613

93.939

0.485
  comEA Latilactobacillus sakei subsp. sakei 23K

50

96.97

0.485
  comEA Legionella pneumophila str. Paris

46.875

96.97

0.455
  comEA Legionella pneumophila strain ERS1305867

46.875

96.97

0.455
  comEA Streptococcus thermophilus LMD-9

46.667

90.909

0.424
  comE1/comEA Haemophilus influenzae Rd KW20

48.276

87.879

0.424
  comEA Acinetobacter baylyi ADP1

48.276

87.879

0.424
  comEA Vibrio campbellii strain DS40M4

44.828

87.879

0.394
  comEA Acinetobacter baumannii D1279779

38.71

93.939

0.364
  comEA Acinetobacter baumannii strain A118

38.71

93.939

0.364
  comEA Vibrio parahaemolyticus RIMD 2210633

41.379

87.879

0.364

Multiple sequence alignment