Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LLB26_RS08465 Genome accession   NZ_CP032435
Coordinates   1722231..1722713 (-) Length   160 a.a.
NCBI ID   WP_237025447.1    Uniprot ID   A0AAJ6MJU2
Organism   Lactococcus cremoris strain B26     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717231..1727713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLB26_RS08440 (LLB26_1669) - 1717478..1717693 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLB26_RS08445 (LLB26_1670) - 1717876..1718652 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLB26_RS08450 (LLB26_1671) - 1718936..1719240 (-) 305 Protein_1678 DNA internalization-related competence protein ComEC/Rec2 -
  LLB26_RS08455 (LLB26_1672) - 1719261..1720151 (-) 891 WP_081213191.1 IS982-like element IS982B family transposase -
  LLB26_RS12890 (LLB26_1673) comEC 1720228..1720737 (-) 510 WP_228764033.1 MBL fold metallo-hydrolase Machinery gene
  LLB26_RS08460 (LLB26_1674) comEC 1720734..1722005 (-) 1272 WP_324187032.1 ComEC/Rec2 family competence protein Machinery gene
  LLB26_RS12895 comEA 1722133..1722234 (-) 102 WP_228764031.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLB26_RS08465 (LLB26_1675) comEA 1722231..1722713 (-) 483 WP_237025447.1 SLBB domain-containing protein Machinery gene
  LLB26_RS08470 (LLB26_1676) - 1722844..1724205 (-) 1362 WP_014572203.1 ABC transporter permease -
  LLB26_RS08475 (LLB26_1677) - 1724202..1725134 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLB26_RS08480 (LLB26_1678) - 1725240..1725638 (-) 399 WP_011676775.1 hypothetical protein -
  LLB26_RS08485 (LLB26_1679) - 1725755..1726314 (-) 560 Protein_1687 N-acetyltransferase family protein -
  LLB26_RS08490 (LLB26_1680) - 1726487..1727665 (-) 1179 WP_015082749.1 SLC13 family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17440.62 Da        Isoelectric Point: 8.3734

>NTDB_id=315871 LLB26_RS08465 WP_237025447.1 1722231..1722713(-) (comEA) [Lactococcus cremoris strain B26]
MEFLYIFTNSSKQAENLSVENLSSSSTKSSVSKFNSSSEKNKNEIMVDLKGAVAKPNVYQISSDERLVDLIRQAGGFTDQ
ADQKSINLSSKLKDEEVIYVPKLGESLSSESTDSPISSSVSNQVSTTSGPKININKADLTELQKLTGIGQKKRKILLIFA

Nucleotide


Download         Length: 483 bp        

>NTDB_id=315871 LLB26_RS08465 WP_237025447.1 1722231..1722713(-) (comEA) [Lactococcus cremoris strain B26]
GTGGAATTTTTATATATTTTCACCAATTCATCAAAGCAAGCTGAAAATCTGTCAGTAGAAAATTTGAGCTCTAGTTCTAC
CAAAAGCTCTGTCAGTAAATTTAATAGCAGCAGTGAAAAAAATAAAAACGAAATTATGGTTGATTTGAAAGGAGCGGTTG
CAAAACCTAATGTATACCAAATTTCGTCAGATGAGCGCCTTGTTGATTTAATTAGGCAAGCGGGAGGATTTACTGACCAA
GCAGACCAAAAATCAATCAATCTGTCATCGAAACTTAAAGATGAAGAAGTGATTTATGTACCAAAACTTGGGGAAAGTTT
AAGTTCAGAAAGTACTGACAGTCCTATTAGCAGCTCTGTCAGTAATCAAGTTTCAACGACAAGTGGTCCAAAAATAAATA
TCAATAAAGCAGACCTGACAGAATTACAAAAACTGACTGGAATTGGTCAAAAAAAGCGCAAGATATTATTGATTTTCGCA
TGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(46-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

87.975

98.75

0.869
  comEA Latilactobacillus sakei subsp. sakei 23K

36.782

100

0.4

Multiple sequence alignment