Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D2M30_RS08610 Genome accession   NZ_CP032146
Coordinates   1693210..1694253 (+) Length   347 a.a.
NCBI ID   WP_013352318.1    Uniprot ID   Q8GJG2
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688210..1699253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08580 (D2M30_08595) ymfI 1688229..1688957 (+) 729 WP_088613854.1 elongation factor P 5-aminopentanone reductase -
  D2M30_RS08585 (D2M30_08600) - 1689033..1689290 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  D2M30_RS08590 (D2M30_08605) - 1689418..1690209 (+) 792 WP_013352314.1 YmfK family protein -
  D2M30_RS08595 (D2M30_08610) - 1690228..1691115 (+) 888 WP_125122620.1 RodZ domain-containing protein -
  D2M30_RS08600 (D2M30_08615) pgsA 1691189..1691770 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D2M30_RS08605 (D2M30_08620) cinA 1691788..1693038 (+) 1251 WP_045506105.1 competence/damage-inducible protein A Machinery gene
  D2M30_RS08610 (D2M30_08625) recA 1693210..1694253 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  D2M30_RS08615 (D2M30_08630) - 1694420..1695601 (+) 1182 WP_125122621.1 serine hydrolase -
  D2M30_RS08620 (D2M30_08635) rny 1695892..1697451 (+) 1560 WP_003154140.1 ribonuclease Y -
  D2M30_RS08625 (D2M30_08640) ymdB 1697513..1698307 (+) 795 WP_013352320.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  D2M30_RS08630 (D2M30_08645) spoVS 1698507..1698767 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37961.15 Da        Isoelectric Point: 4.7528

>NTDB_id=314020 D2M30_RS08610 WP_013352318.1 1693210..1694253(+) (recA) [Bacillus amyloliquefaciens strain YP6]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTEKAEEVQEELEFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=314020 D2M30_RS08610 WP_013352318.1 1693210..1694253(+) (recA) [Bacillus amyloliquefaciens strain YP6]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTTGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCGAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCCGAGCATGCTCTTGATCCTGTGTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTGCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTGGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTCGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTCATGGGGAATAAGACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTTGATATCGTGCAGAAAAGCGGCTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGACAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAACATTACGGTTTGGACAATAACGGTGTTACGGAAAAAGCGGAAGAAGTTCAGGAAGAGCTTGAATTCGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8GJG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.701

100

0.98
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus pneumoniae D39

67.251

98.559

0.663
  recA Streptococcus pneumoniae Rx1

67.251

98.559

0.663
  recA Streptococcus pneumoniae R6

67.251

98.559

0.663
  recA Streptococcus pneumoniae TIGR4

67.251

98.559

0.663
  recA Streptococcus mutans UA159

65.988

99.135

0.654
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.634

94.524

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Pseudomonas stutzeri DSM 10701

60.997

98.271

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Acinetobacter baylyi ADP1

59.42

99.424

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.084

0.562

Multiple sequence alignment