Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D2M30_RS08605 Genome accession   NZ_CP032146
Coordinates   1691788..1693038 (+) Length   416 a.a.
NCBI ID   WP_045506105.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1686788..1698038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08575 (D2M30_08590) yfmH 1686884..1688170 (+) 1287 WP_065521269.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  D2M30_RS08580 (D2M30_08595) ymfI 1688229..1688957 (+) 729 WP_088613854.1 elongation factor P 5-aminopentanone reductase -
  D2M30_RS08585 (D2M30_08600) - 1689033..1689290 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  D2M30_RS08590 (D2M30_08605) - 1689418..1690209 (+) 792 WP_013352314.1 YmfK family protein -
  D2M30_RS08595 (D2M30_08610) - 1690228..1691115 (+) 888 WP_125122620.1 RodZ domain-containing protein -
  D2M30_RS08600 (D2M30_08615) pgsA 1691189..1691770 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D2M30_RS08605 (D2M30_08620) cinA 1691788..1693038 (+) 1251 WP_045506105.1 competence/damage-inducible protein A Machinery gene
  D2M30_RS08610 (D2M30_08625) recA 1693210..1694253 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  D2M30_RS08615 (D2M30_08630) - 1694420..1695601 (+) 1182 WP_125122621.1 serine hydrolase -
  D2M30_RS08620 (D2M30_08635) rny 1695892..1697451 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44958.27 Da        Isoelectric Point: 4.9791

>NTDB_id=314019 D2M30_RS08605 WP_045506105.1 1691788..1693038(+) (cinA) [Bacillus amyloliquefaciens strain YP6]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRIMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGLVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=314019 D2M30_RS08605 WP_045506105.1 1691788..1693038(+) (cinA) [Bacillus amyloliquefaciens strain YP6]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAATGTGTTTTATCATACCGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCCGGCGGGCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGATCGATTGAAGAGTATTT
CGCGAAAACAAAACGGATAATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAAGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGACTTAGAAGATATCATTGATGCGCAAACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTCACGCTGCGTTTAACGGCAAAACATGCCGACGAAAAAGAAACCGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAAAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTTAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGTGTTGCGGGCCCCGATCCGCAGGAAGGGCATGCCCCGGGCCTCGTCT
TTATCGGTATTTCCGCGGAAGGCAAAGAAGAGGTTCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38

Multiple sequence alignment