Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0S48_RS05130 Genome accession   NZ_CP031739
Coordinates   973347..974414 (-) Length   355 a.a.
NCBI ID   WP_225215853.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968347..979414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS05115 (D0S48_05115) - 969964..970230 (-) 267 WP_144538118.1 stage V sporulation protein S -
  D0S48_RS05120 (D0S48_05120) - 970317..971114 (-) 798 WP_151110486.1 TIGR00282 family metallophosphoesterase -
  D0S48_RS05125 (D0S48_05125) rny 971191..972744 (-) 1554 WP_144538257.1 ribonuclease Y -
  D0S48_RS05130 (D0S48_05130) recA 973347..974414 (-) 1068 WP_225215853.1 recombinase RecA Machinery gene
  D0S48_RS05135 (D0S48_05135) cinA 974587..975843 (-) 1257 WP_151110488.1 competence/damage-inducible protein A Machinery gene
  D0S48_RS05140 (D0S48_05140) pgsA 975859..976437 (-) 579 WP_144538115.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D0S48_RS05145 (D0S48_05145) - 976488..977357 (-) 870 WP_151110490.1 RodZ family helix-turn-helix domain-containing protein -
  D0S48_RS05150 (D0S48_05150) - 977374..978183 (-) 810 WP_151110492.1 YmfK family protein -
  D0S48_RS05155 (D0S48_05155) ymfI 978300..979031 (-) 732 WP_151110494.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38492.78 Da        Isoelectric Point: 4.8021

>NTDB_id=310929 D0S48_RS05130 WP_225215853.1 973347..974414(-) (recA) [Psychrobacillus sp. AK 1817]
MANDRKAALEMALKQIEKQFGKGSVMKLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEIIVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGVINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIMGNK
TKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEIVDIGSEYDIIQKSGSWYAYNEERIGQGRENAKQFLKENPAIKDEIAS
KIRQSLGMTSNSFVIAAHEQEEEDGEFELLLDDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=310929 D0S48_RS05130 WP_225215853.1 973347..974414(-) (recA) [Psychrobacillus sp. AK 1817]
TTGGCTAATGATCGTAAAGCAGCGTTAGAAATGGCTTTAAAACAAATAGAGAAGCAATTTGGGAAAGGTTCTGTTATGAA
GCTAGGAGAGAAAACAGACCGTGAAATCTCCACTTCTTCAAGTGGTTCCCTAGCTTTGGATGCAGCTCTTGGAATAGGCG
GATATCCACGTGGCCGTATAATTGAAATCTATGGACCTGAAAGCTCAGGTAAAACAACAGTAGCTCTTCACGCAATTGCA
GAAATTCAAAAAACTGGTGGCCAAGCAGCATTTATTGATGCTGAGCATGCATTGGACCCTGTCTATGCACAAAAACTAGG
CGTTAATATCGATGAATTATTATTATCTCAACCTGACACTGGAGAGCAAGCCCTTGAAATCGCAGAAGCTCTAGTTCGCA
GTGGTGCGGTTGAAATCATAGTTATTGATTCCGTAGCAGCTTTAGTACCAAAAGCAGAGATAGAAGGAGAAATGGGAGAT
TCTCATATCGGTCTTCAAGCTCGCTTAATGTCTCAAGCTTTACGTAAGCTTTCTGGTGTTATTAACAAATCTAACACGAT
AGCTATTTTCATCAACCAAATTCGTGAAAAAGTAGGCGTAATGTTTGGTAACCCAGAGGTAACACCAGGTGGTCGTGCGC
TTAAATTCTATAGTTCCGTTCGCTTGGAAGTAAGACGTGCAGAAGCTATTAAACAAGGTACTGACATTATGGGTAACAAA
ACAAAAATTAAAGTAGTAAAAAATAAAGTAGCTCCACCATTTAAAACAGCAGAAGTAGATATTATGTATGGAGAAGGGAT
TTCTCAAGAAGGAGAAATCGTCGACATAGGTTCTGAATACGATATTATCCAAAAAAGCGGTTCTTGGTATGCATACAATG
AAGAACGCATAGGTCAAGGGCGAGAAAACGCTAAACAATTCTTGAAGGAAAATCCAGCTATTAAAGACGAAATCGCATCA
AAAATTCGTCAATCTTTAGGAATGACTTCAAACTCATTTGTTATTGCGGCACATGAACAAGAGGAAGAAGACGGCGAATT
CGAGCTACTTTTAGATGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.337

93.521

0.789
  recA Latilactobacillus sakei subsp. sakei 23K

72.316

99.718

0.721
  recA Streptococcus mutans UA159

68.976

93.521

0.645
  recA Streptococcus pyogenes NZ131

68.882

93.239

0.642
  recA Lactococcus lactis subsp. cremoris KW2

67.463

94.366

0.637
  recA Streptococcus pneumoniae Rx1

68.693

92.676

0.637
  recA Streptococcus pneumoniae D39

68.693

92.676

0.637
  recA Streptococcus pneumoniae R6

68.693

92.676

0.637
  recA Streptococcus pneumoniae TIGR4

68.693

92.676

0.637
  recA Streptococcus mitis NCTC 12261

68.693

92.676

0.637
  recA Streptococcus mitis SK321

68.085

92.676

0.631
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.689

97.746

0.623
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Vibrio cholerae strain A1552

61.96

97.746

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.96

97.746

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.244

92.394

0.603
  recA Acinetobacter baylyi ADP1

61.671

97.746

0.603
  recA Glaesserella parasuis strain SC1401

60.857

98.592

0.6
  recA Acinetobacter baumannii D1279779

61.628

96.901

0.597
  recA Pseudomonas stutzeri DSM 10701

63.03

92.958

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.641

96.62

0.586
  recA Helicobacter pylori strain NCTC11637

63.077

91.549

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

92.958

0.577
  recA Helicobacter pylori 26695

62.769

91.549

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

91.831

0.555

Multiple sequence alignment