Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D0S48_RS05135 Genome accession   NZ_CP031739
Coordinates   974587..975843 (-) Length   418 a.a.
NCBI ID   WP_151110488.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 969587..980843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS05115 (D0S48_05115) - 969964..970230 (-) 267 WP_144538118.1 stage V sporulation protein S -
  D0S48_RS05120 (D0S48_05120) - 970317..971114 (-) 798 WP_151110486.1 TIGR00282 family metallophosphoesterase -
  D0S48_RS05125 (D0S48_05125) rny 971191..972744 (-) 1554 WP_144538257.1 ribonuclease Y -
  D0S48_RS05130 (D0S48_05130) recA 973347..974414 (-) 1068 WP_225215853.1 recombinase RecA Machinery gene
  D0S48_RS05135 (D0S48_05135) cinA 974587..975843 (-) 1257 WP_151110488.1 competence/damage-inducible protein A Machinery gene
  D0S48_RS05140 (D0S48_05140) pgsA 975859..976437 (-) 579 WP_144538115.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D0S48_RS05145 (D0S48_05145) - 976488..977357 (-) 870 WP_151110490.1 RodZ family helix-turn-helix domain-containing protein -
  D0S48_RS05150 (D0S48_05150) - 977374..978183 (-) 810 WP_151110492.1 YmfK family protein -
  D0S48_RS05155 (D0S48_05155) ymfI 978300..979031 (-) 732 WP_151110494.1 elongation factor P 5-aminopentanone reductase -
  D0S48_RS05160 (D0S48_05160) yfmH 979024..980328 (-) 1305 WP_151110496.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45925.75 Da        Isoelectric Point: 4.9445

>NTDB_id=310930 D0S48_RS05135 WP_151110488.1 974587..975843(-) (cinA) [Psychrobacillus sp. AK 1817]
MKAEIIAVGSELLLGQISNTNARFISSQLAELGIDVYYHTVVGDNPNRLLDSIKIAEERADLIIFSGGLGPTKDDLTKET
IAKHLNKNLVLDDHAIMYIEDFFKRSGRMMTENNKKQALVLEGCTVLENKHGMAPGMLLSTENHAYMLLPGPPKELEPMF
QFEAKPLLPKLLYKENVIMSHVIRFYGIGEAELETQVQDLLDNQTNPTLAPLASDGEVTLRLTAKADTEEEAWKSIEILQ
AEILNRVGKYVYGYNNESLASKLRDILIDNELTISAAESMTAGLFQSELAAVPGMGVALVGGVITYTEEVKINQLGVKKE
TIDEHSVVSSQVAEEMAIRVKEKFNTTIGVGITGAAGPDGHGDQPAGTVWIGIAYGDVAPISYKLNLSGMRNTNRLRTVK
FAIHYLIRLLREEGLSKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=310930 D0S48_RS05135 WP_151110488.1 974587..975843(-) (cinA) [Psychrobacillus sp. AK 1817]
ATGAAAGCAGAGATTATTGCGGTAGGTTCAGAGCTATTATTAGGTCAAATTTCTAATACAAATGCCCGATTCATATCTTC
CCAGCTTGCGGAGTTAGGGATAGACGTATATTATCATACGGTAGTTGGAGATAATCCCAATCGGTTATTAGACTCCATCA
AAATCGCAGAAGAACGAGCAGACCTAATTATTTTTTCAGGAGGTTTAGGGCCTACTAAGGACGACCTAACAAAAGAAACA
ATTGCTAAACACCTTAACAAAAATCTTGTACTTGATGATCACGCGATTATGTATATAGAAGATTTCTTTAAAAGATCAGG
AAGAATGATGACTGAGAATAACAAAAAACAAGCGCTGGTTTTAGAAGGCTGTACAGTCTTAGAAAACAAACATGGGATGG
CTCCAGGAATGCTACTTTCAACAGAGAACCATGCATATATGTTATTACCTGGGCCTCCTAAGGAATTGGAGCCAATGTTC
CAATTTGAGGCTAAGCCACTACTACCTAAGTTATTGTATAAAGAAAACGTTATTATGTCTCATGTAATACGCTTTTATGG
AATAGGAGAAGCAGAGTTAGAGACTCAGGTCCAAGACTTGTTAGACAATCAAACAAATCCAACTTTAGCTCCTTTGGCTT
CTGATGGAGAGGTAACGTTAAGACTTACTGCGAAAGCAGACACTGAGGAAGAAGCATGGAAAAGCATTGAAATACTACAG
GCTGAAATTTTAAATCGTGTCGGTAAATATGTGTATGGTTATAATAACGAATCCCTTGCCTCGAAGTTAAGAGATATTCT
AATTGACAATGAACTAACAATATCTGCTGCAGAAAGTATGACAGCAGGTCTTTTCCAATCAGAGTTGGCAGCTGTCCCGG
GAATGGGGGTTGCGCTTGTAGGTGGTGTTATCACTTACACTGAAGAGGTAAAAATCAATCAACTAGGTGTTAAGAAGGAA
ACCATTGATGAACACAGTGTGGTCTCTAGTCAGGTTGCTGAGGAGATGGCAATCCGTGTTAAAGAAAAATTTAATACTAC
AATTGGTGTAGGTATCACTGGAGCTGCTGGTCCAGACGGACATGGCGACCAACCGGCCGGTACGGTTTGGATCGGAATTG
CATATGGGGACGTTGCACCAATATCCTACAAATTGAATCTTTCAGGCATGAGAAACACGAACAGATTAAGAACTGTGAAA
TTTGCAATCCATTATCTTATTCGTTTACTCAGAGAAGAGGGACTTTCAAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.126

98.565

0.533
  cinA Streptococcus mitis SK321

45.647

100

0.464
  cinA Streptococcus mutans UA159

45.714

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.176

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.176

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.941

100

0.457
  cinA Streptococcus pneumoniae R6

44.941

100

0.457
  cinA Streptococcus pneumoniae D39

44.706

100

0.455
  cinA Streptococcus suis isolate S10

40.212

90.431

0.364

Multiple sequence alignment