Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DDV21_RS11300 Genome accession   NZ_CP031733
Coordinates   2356694..2357848 (-) Length   384 a.a.
NCBI ID   WP_116877802.1    Uniprot ID   -
Organism   Streptococcus chenjunshii strain Z15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2351694..2362848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS11270 (DDV21_011270) - 2353075..2353374 (-) 300 WP_116877807.1 DUF1292 domain-containing protein -
  DDV21_RS11275 (DDV21_011275) ruvX 2353430..2353849 (-) 420 WP_116877806.1 Holliday junction resolvase RuvX -
  DDV21_RS11280 (DDV21_011280) - 2353846..2354115 (-) 270 WP_116877805.1 IreB family regulatory phosphoprotein -
  DDV21_RS11285 (DDV21_011285) brsR 2354418..2354858 (+) 441 WP_116877804.1 LytTR family DNA-binding domain-containing protein Regulator
  DDV21_RS11290 (DDV21_011290) - 2355250..2355711 (+) 462 WP_116877803.1 DUF3021 domain-containing protein -
  DDV21_RS11295 (DDV21_011295) spx 2355901..2356299 (-) 399 WP_067064532.1 transcriptional regulator Spx -
  DDV21_RS11300 (DDV21_011300) recA 2356694..2357848 (-) 1155 WP_116877802.1 recombinase RecA Machinery gene
  DDV21_RS11305 (DDV21_011305) cinA 2358006..2359265 (-) 1260 WP_116877801.1 competence/damage-inducible protein A Machinery gene
  DDV21_RS11310 (DDV21_011310) - 2359346..2359909 (-) 564 WP_116877800.1 DNA-3-methyladenine glycosylase I -
  DDV21_RS11315 (DDV21_011315) ruvA 2360691..2361284 (-) 594 WP_116877799.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41441.00 Da        Isoelectric Point: 4.8482

>NTDB_id=310863 DDV21_RS11300 WP_116877802.1 2356694..2357848(-) (recA) [Streptococcus chenjunshii strain Z15]
MAKKAKKTEEITKKFGDERQKALNTALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGSSKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELLKIASELDIIQKAGAWYSYKNEKIGQGSE
NAKKFLAEHPEIFDEVDRQVRVEYGLLEGDPNQENPAENEAESEKQAKDGDLVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=310863 DDV21_RS11300 WP_116877802.1 2356694..2357848(-) (recA) [Streptococcus chenjunshii strain Z15]
TTGGCAAAAAAAGCAAAAAAAACAGAAGAAATTACTAAAAAATTCGGCGATGAGCGCCAAAAAGCCCTCAATACCGCTTT
AAAAAACATTGAAAAAGATTTCGGAAAAGGAGCTGTTATGCGCCTTGGAGAACGTGCTGAGCAAAAAGTTCAGGTGATGA
GTTCCGGAAGTCTTGCACTTGATATTGCTCTCGGGGTGGGCGGTTACCCTAAAGGGCGTATCATTGAGATTTACGGCCCT
GAATCTTCTGGGAAGACAACTGTCGCCCTACATGCTGTAGCTCAGGCACAAAAGGAAGGCGGCATTGCTGCTTTCATTGA
TGCAGAGCATGCGCTTGATCCGGCTTATGCACAGGCTCTTGGTGTTAATATTGATGAACTTCTCCTGTCACAGCCGGATT
CAGGTGAACAAGGTCTTGAAATTGCCGGTCAGTTAATTGATTCGGGTGCGGTTGACCTTGTTGTAGTAGACTCTGTAGCT
GCACTTGTACCGCGTGCCGAAATTGATGGAGATATTGGTGACAGCCATGTTGGGCTGCAGGCACGTATGATGAGCCAAGC
TATGCGCAAACTCTCGGCTTCAATTAATAAAACGAAAACAATTGCCATTTTCATCAATCAGCTGCGAGAAAAGGTCGGAA
TTATGTTTGGCAATCCGGAAACAACTCCCGGCGGACGGGCGCTTAAATTTTATGCTTCGGTGCGTCTGGATGTCCGCGGC
AACACACAAATTAAAGGAACTGGCAGCAGTAAGGATACCAATGTTGGTAAAGAGACCAAGATCAAGGTTGTCAAAAATAA
GGTGGCTCCTCCATTTAAGGAAGCATTTGTTGAAATTATGTACGGTGAAGGGATTTCACGTACAGGAGAGCTTCTAAAAA
TAGCCAGTGAACTGGATATCATCCAAAAAGCAGGAGCTTGGTATTCTTACAAGAATGAAAAAATCGGTCAGGGTTCAGAA
AATGCTAAGAAATTTTTGGCTGAGCACCCTGAAATTTTTGATGAAGTGGATAGACAAGTTCGTGTAGAATACGGCCTGCT
TGAAGGAGACCCAAATCAGGAAAATCCAGCAGAAAATGAAGCTGAATCAGAAAAACAAGCAAAAGATGGCGATCTTGTTT
TGGATCTTGATGATGCAATTGAAATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.979

100

0.87
  recA Streptococcus pneumoniae Rx1

85.974

100

0.862
  recA Streptococcus pneumoniae D39

85.974

100

0.862
  recA Streptococcus pneumoniae R6

85.974

100

0.862
  recA Streptococcus pneumoniae TIGR4

85.974

100

0.862
  recA Streptococcus pyogenes NZ131

85.417

100

0.854
  recA Streptococcus mitis NCTC 12261

85.379

99.74

0.852
  recA Streptococcus mitis SK321

84.856

99.74

0.846
  recA Lactococcus lactis subsp. cremoris KW2

76.369

90.365

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

70.695

86.198

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

85.677

0.594
  recA Neisseria gonorrhoeae MS11

59.429

91.146

0.542
  recA Neisseria gonorrhoeae MS11

59.429

91.146

0.542
  recA Neisseria gonorrhoeae strain FA1090

59.429

91.146

0.542
  recA Glaesserella parasuis strain SC1401

58.974

91.406

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

88.281

0.534
  recA Acinetobacter baylyi ADP1

58.621

90.625

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.115

0.529
  recA Acinetobacter baumannii D1279779

61.846

84.635

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Pseudomonas stutzeri DSM 10701

56.034

90.625

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

86.198

0.503
  recA Helicobacter pylori 26695

57.273

85.938

0.492
  recA Helicobacter pylori strain NCTC11637

57.273

85.938

0.492
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment