Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EYQ98_RS10940 Genome accession   NZ_CP038186
Coordinates   2135179..2135607 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   Q65J43
Organism   Bacillus licheniformis strain MCC 2514     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2130179..2140607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS10915 (EYQ98_10915) - 2130362..2130970 (+) 609 WP_009328237.1 flavin reductase family protein -
  EYQ98_RS10920 (EYQ98_10920) wrbA 2131171..2131782 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  EYQ98_RS22045 - 2132103..2132243 (+) 141 WP_003182211.1 hypothetical protein -
  EYQ98_RS10925 (EYQ98_10925) - 2132236..2133069 (+) 834 WP_003182213.1 prohibitin family protein -
  EYQ98_RS10930 (EYQ98_10930) - 2133160..2133921 (+) 762 WP_003182215.1 hypothetical protein -
  EYQ98_RS10935 (EYQ98_10935) - 2133981..2134820 (+) 840 WP_003182218.1 thymidylate synthase -
  EYQ98_RS10940 (EYQ98_10940) nucA/comI 2135179..2135607 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  EYQ98_RS10945 (EYQ98_10945) dinR/lexA 2135803..2136426 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  EYQ98_RS10950 (EYQ98_10950) yneA 2136579..2136890 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  EYQ98_RS10955 (EYQ98_10955) - 2136909..2137556 (+) 648 WP_003182227.1 recombinase family protein -
  EYQ98_RS10960 (EYQ98_10960) - 2137622..2137855 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  EYQ98_RS10965 (EYQ98_10965) recP/tkt 2138022..2140025 (+) 2004 WP_009328229.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=309910 EYQ98_RS10940 WP_003182220.1 2135179..2135607(+) (nucA/comI) [Bacillus licheniformis strain MCC 2514]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=309910 EYQ98_RS10940 WP_003182220.1 2135179..2135607(+) (nucA/comI) [Bacillus licheniformis strain MCC 2514]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6EJS
  PDB 6EJT
  PDB 6EJU
  PDB 6EJV
  PDB 9FJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521

Multiple sequence alignment