Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CH624_RS02205 Genome accession   NZ_CP031682
Coordinates   434112..434765 (-) Length   217 a.a.
NCBI ID   WP_006995324.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 429112..439765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS02205 (CH624_02205) sxy/tfoX 434112..434765 (-) 654 WP_006995324.1 DNA transformation protein TfoX Regulator
  CH624_RS02210 (CH624_02210) recA 435138..436202 (+) 1065 WP_042610909.1 recombinase RecA Machinery gene
  CH624_RS02215 (CH624_02215) recX 436281..436739 (+) 459 WP_005651075.1 recombination regulator RecX -
  CH624_RS02220 (CH624_02220) crcB 436736..437122 (-) 387 WP_005665585.1 fluoride efflux transporter CrcB -
  CH624_RS02225 (CH624_02225) - 437122..437940 (-) 819 WP_112109830.1 Cof-type HAD-IIB family hydrolase -
  CH624_RS02230 (CH624_02230) - 438343..439347 (+) 1005 WP_112109829.1 ornithine carbamoyltransferase -
  CH624_RS09980 (CH624_02235) speFL 439554..439748 (+) 195 WP_112109828.1 leader peptide SpeFL -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24987.35 Da        Isoelectric Point: 10.0171

>NTDB_id=309909 CH624_RS02205 WP_006995324.1 434112..434765(-) (sxy/tfoX) [Haemophilus influenzae strain P665-7858]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=309909 CH624_RS02205 WP_006995324.1 434112..434765(-) (sxy/tfoX) [Haemophilus influenzae strain P665-7858]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTAAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment