Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EGCR1_RS13270 Genome accession   NZ_CP030932
Coordinates   2706836..2707882 (+) Length   348 a.a.
NCBI ID   WP_086305903.1    Uniprot ID   -
Organism   Enterococcus gilvus strain CR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2701836..2712882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGCR1_RS13250 (EGCR1_13255) ymfI 2702871..2703596 (+) 726 WP_086305905.1 elongation factor P 5-aminopentanone reductase -
  EGCR1_RS13255 (EGCR1_13260) - 2703748..2704614 (+) 867 WP_114525266.1 RodZ domain-containing protein -
  EGCR1_RS13260 (EGCR1_13265) pgsA 2704649..2705230 (+) 582 WP_010782100.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGCR1_RS13265 (EGCR1_13270) cinA 2705327..2706574 (+) 1248 WP_114525267.1 competence/damage-inducible protein A Machinery gene
  EGCR1_RS13270 (EGCR1_13275) recA 2706836..2707882 (+) 1047 WP_086305903.1 recombinase RecA Machinery gene
  EGCR1_RS13275 (EGCR1_13280) rny 2708139..2709695 (+) 1557 WP_010782097.1 ribonuclease Y -
  EGCR1_RS13280 (EGCR1_13285) mprF 2709916..2712477 (+) 2562 WP_010782096.1 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37439.67 Da        Isoelectric Point: 4.9162

>NTDB_id=302536 EGCR1_RS13270 WP_086305903.1 2706836..2707882(+) (recA) [Enterococcus gilvus strain CR1]
MANDRKAALDAAMKKIEKNYGKGSIMKLGEKVDQKISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGRENAKKYLADHPEMMAEVAT
RVRAAYGIGEEGESVEDEAGQEELPLEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=302536 EGCR1_RS13270 WP_086305903.1 2706836..2707882(+) (recA) [Enterococcus gilvus strain CR1]
TTGGCTAATGATCGCAAGGCAGCTTTAGATGCTGCAATGAAGAAGATTGAAAAGAATTACGGAAAAGGTTCGATCATGAA
ATTAGGTGAGAAGGTCGACCAAAAAATCTCAACGATTCCAAGCGGCTCTTTGGCATTGGACGTGGCGTTAGGTGTGGGTG
GTTACCCTCGCGGCCGGATCATCGAAGTATACGGACCAGAAAGTTCTGGTAAAACAACGGTTGCACTGCACGCGATCGCA
GAAGTTCAAAAACACGGCGGAACGGCTGCCTTTATTGATGCCGAACACGCATTAGATCCTCAATACGCACAGCGTTTGGG
CGTGAATATCGATGAATTGCTGCTTTCACAACCAGATACAGGGGAACAAGGATTAGAAATTGCGGATGCGCTGGTTTCAA
GTGGCGCTGTCGACATCATTGTAATTGACTCCGTGGCAGCATTAGTGCCTCGGGCTGAGATCGATGGTGAAATGGGTGAC
GCACACGTTGGGCTGCAAGCTCGTTTGATGTCGCAAGCGTTGCGTAAATTATCGGGTTCAATTAACAAGACCAAAACGAT
CGCCGTATTTATCAACCAAATCCGTGAAAAAGTGGGCGTGATGTTCGGGAATCCAGAAGTGACTCCTGGTGGACGGGCAT
TGAAATTCTACGCGACGGTTCGTTTAGAAGTGCGTCGTGCGGAACAATTGAAAAACGGGACGGACATCGTCGGGAACCGC
ACAAAAATCAAAGTTGTAAAAAACAAAGTGGCTCCGCCATTTAAAGTTGCCGAAGTCGACATCATGTACGGTTTGGGGAT
CTCACAAGAAGGTGAGTTGCTAGACATGGCTGTTGAACAGGACATCATCGACAAGAGCGGTGCTTGGTACGGTTATAAAG
AGGACCGTATCGGACAAGGGCGTGAAAACGCCAAGAAATATTTGGCTGATCATCCAGAAATGATGGCTGAAGTTGCGACA
CGTGTGCGTGCAGCATACGGGATCGGTGAGGAAGGCGAATCGGTCGAAGACGAGGCTGGACAAGAAGAATTGCCATTGGA
AGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.656

100

0.799

  recA Bacillus subtilis subsp. subtilis str. 168

76.667

94.828

0.727

  recA Streptococcus pneumoniae R6

68.056

100

0.704

  recA Streptococcus pneumoniae Rx1

68.056

100

0.704

  recA Streptococcus pneumoniae D39

68.056

100

0.704

  recA Streptococcus pneumoniae TIGR4

68.056

100

0.704

  recA Streptococcus mitis NCTC 12261

70.725

99.138

0.701

  recA Streptococcus mitis SK321

70.725

99.138

0.701

  recA Streptococcus mutans UA159

66.667

100

0.667

  recA Streptococcus pyogenes NZ131

69.789

95.115

0.664

  recA Lactococcus lactis subsp. cremoris KW2

67.665

95.977

0.649

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.966

0.586

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

98.563

0.578

  recA Neisseria gonorrhoeae strain FA1090

61.094

94.54

0.578

  recA Neisseria gonorrhoeae MS11

61.094

94.54

0.578

  recA Neisseria gonorrhoeae MS11

61.094

94.54

0.578

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

93.391

0.572

  recA Ralstonia pseudosolanacearum GMI1000

63.578

89.943

0.572

  recA Helicobacter pylori strain NCTC11637

57.514

99.425

0.572

  recA Helicobacter pylori 26695

57.514

99.425

0.572

  recA Glaesserella parasuis strain SC1401

62.069

91.667

0.569

  recA Pseudomonas stutzeri DSM 10701

61.111

93.103

0.569

  recA Vibrio cholerae strain A1552

60.991

92.816

0.566

  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

92.816

0.566

  recA Acinetobacter baumannii D1279779

60.681

92.816

0.563

  recA Acinetobacter baylyi ADP1

60.062

92.816

0.557


Multiple sequence alignment