Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EGCR1_RS13265 Genome accession   NZ_CP030932
Coordinates   2705327..2706574 (+) Length   415 a.a.
NCBI ID   WP_114525267.1    Uniprot ID   -
Organism   Enterococcus gilvus strain CR1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2700327..2711574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGCR1_RS13245 (EGCR1_13250) yfmH 2701577..2702869 (+) 1293 WP_114525265.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EGCR1_RS13250 (EGCR1_13255) ymfI 2702871..2703596 (+) 726 WP_086305905.1 elongation factor P 5-aminopentanone reductase -
  EGCR1_RS13255 (EGCR1_13260) - 2703748..2704614 (+) 867 WP_114525266.1 RodZ domain-containing protein -
  EGCR1_RS13260 (EGCR1_13265) pgsA 2704649..2705230 (+) 582 WP_010782100.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGCR1_RS13265 (EGCR1_13270) cinA 2705327..2706574 (+) 1248 WP_114525267.1 competence/damage-inducible protein A Machinery gene
  EGCR1_RS13270 (EGCR1_13275) recA 2706836..2707882 (+) 1047 WP_086305903.1 recombinase RecA Machinery gene
  EGCR1_RS13275 (EGCR1_13280) rny 2708139..2709695 (+) 1557 WP_010782097.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45141.45 Da        Isoelectric Point: 4.5667

>NTDB_id=302535 EGCR1_RS13265 WP_114525267.1 2705327..2706574(+) (cinA) [Enterococcus gilvus strain CR1]
MRAEIIAVGTELLLGQVVNTNATFLSEKLADMGVEVYFHTVVGDNPTRLEELLQLADTRSELILLCGGLGPTDDDLTKNV
LADHVGVPLVQNQAGLDALNAFFAQRQGTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGEKNNYILLPGPPSELKPMF
LEQARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTELAEMIEHQSNPTIAPYAKPNEVTLRITAKTEDERSANALLDQAE
AEVMAKVGAFFYGYGEENSLVEVVVDLLKAQKLSITAAESLTAGEFQATLGTIPGVSEVFPGGFVTYSEKTKASFLGIDP
ALLERVGVVSEACAREMAEAARRLADTDFALSFTGVAGPDELEGQPKGTVYIALAQRNGDTLVSENHFARDRDYVRHSSV
MKGLDMLRRAILNKN

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=302535 EGCR1_RS13265 WP_114525267.1 2705327..2706574(+) (cinA) [Enterococcus gilvus strain CR1]
ATGAGAGCAGAGATCATTGCGGTAGGAACAGAACTTTTGTTAGGACAAGTCGTAAATACGAATGCGACGTTCTTGTCAGA
AAAATTAGCAGATATGGGGGTGGAAGTCTATTTTCATACAGTCGTTGGAGACAATCCAACACGTTTAGAAGAATTGCTTC
AATTAGCCGACACTCGCAGCGAGCTGATTCTTTTGTGCGGCGGCTTAGGACCGACCGATGATGACTTGACCAAGAATGTC
TTAGCCGATCATGTTGGGGTACCGTTGGTTCAAAATCAAGCAGGATTAGATGCTTTGAATGCTTTCTTTGCGCAACGTCA
AGGGACAATGACGCCTAACAACCTGCGTCAGATCGAGACATTGCAGGATGGGATTCCGTTGCCGAATCGTACAGGGTTGG
CGATTGGCTGTCTGTACAAAGGTGAAAAGAACAATTACATTTTATTGCCTGGACCACCGAGTGAATTGAAGCCGATGTTC
TTGGAGCAAGCGCGCCCATTACTGGAAAAGGAATTTCCAACGACGGAAAAGCTGACCTCGCGAGTGCTGCGGTTCTTTGG
GATCGGGGAATCAAAATTGGTGACGGAATTAGCAGAAATGATCGAGCACCAGTCGAATCCAACGATCGCCCCTTATGCGA
AGCCCAATGAGGTCACCTTGCGAATCACTGCAAAGACCGAGGATGAGCGCTCAGCCAATGCGTTATTGGACCAAGCAGAA
GCAGAAGTCATGGCTAAGGTCGGCGCCTTCTTCTACGGATACGGGGAAGAGAATAGTTTGGTCGAAGTCGTTGTGGATCT
GCTTAAGGCGCAGAAGTTAAGTATTACGGCGGCGGAAAGTCTGACTGCGGGAGAATTCCAAGCGACTCTGGGGACGATTC
CAGGCGTTTCTGAGGTATTTCCGGGAGGCTTTGTGACCTATTCTGAAAAAACAAAAGCCAGCTTCTTAGGCATTGATCCA
GCGTTATTAGAACGTGTAGGGGTCGTTAGCGAAGCGTGCGCCAGAGAGATGGCGGAAGCCGCACGGCGTTTAGCAGATAC
AGATTTTGCCTTATCCTTTACAGGTGTTGCGGGTCCAGATGAATTAGAAGGACAACCAAAAGGTACCGTCTATATCGCAT
TGGCACAAAGAAATGGCGACACGCTTGTCAGTGAAAATCACTTTGCTCGAGATCGAGACTATGTCCGCCACAGTTCCGTG
ATGAAGGGCTTAGACATGTTGCGACGAGCAATTCTAAACAAAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae Rx1

52.969

100

0.537
  cinA Streptococcus pneumoniae R6

52.969

100

0.537
  cinA Streptococcus pneumoniae D39

52.969

100

0.537
  cinA Streptococcus pneumoniae TIGR4

52.969

100

0.537
  cinA Streptococcus mitis SK321

52.732

100

0.535
  cinA Streptococcus mitis NCTC 12261

52.732

100

0.535
  cinA Streptococcus mutans UA159

50.962

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

46.005

99.518

0.458
  cinA Streptococcus suis isolate S10

41.546

99.759

0.414

Multiple sequence alignment