Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DPR13_RS12540 Genome accession   NZ_CP030110
Coordinates   2499143..2500189 (-) Length   348 a.a.
NCBI ID   WP_002310440.1    Uniprot ID   A0A828ZMX5
Organism   Enterococcus faecium strain BM4105-RF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2494143..2505189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR13_RS12530 (DPR13_12530) proC 2496283..2497089 (+) 807 WP_002310439.1 pyrroline-5-carboxylate reductase -
  DPR13_RS12535 (DPR13_12535) rny 2497168..2498724 (-) 1557 WP_002287336.1 ribonuclease Y -
  DPR13_RS12540 (DPR13_12540) recA 2499143..2500189 (-) 1047 WP_002310440.1 recombinase RecA Machinery gene
  DPR13_RS12545 (DPR13_12545) cinA 2500298..2501539 (-) 1242 WP_002310441.1 competence/damage-inducible protein A Machinery gene
  DPR13_RS12550 (DPR13_12550) pgsA 2501710..2502288 (-) 579 WP_002310442.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DPR13_RS12555 (DPR13_12555) - 2502496..2503419 (-) 924 WP_002310444.1 RodZ domain-containing protein -
  DPR13_RS12560 (DPR13_12560) - 2503787..2505073 (-) 1287 WP_002320446.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37386.77 Da        Isoelectric Point: 4.8968

>NTDB_id=299331 DPR13_RS12540 WP_002310440.1 2499143..2500189(-) (recA) [Enterococcus faecium strain BM4105-RF]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDTKGQEELPLEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=299331 DPR13_RS12540 WP_002310440.1 2499143..2500189(-) (recA) [Enterococcus faecium strain BM4105-RF]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTATCCCCGTGGACGTATTATCGAAGTATACGGACCTGAAAGTTCAGGTAAAACAACAGTGGCGCTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGATACAGGAGAACAAGGTCTGGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTAGACATCGTAGTAGTCGATTCAGTTGCCGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTAATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTAGAAGTACGTCGTGCAGAACAATTGAAACAAGGTACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGATATGGCAGTAGAAAAAGACATCGTTGATAAAAGCGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGTCAAGGACGGGAAAATGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGCATTGGTGAAGAAGTGGCTGTCCCAGAAGATACAAAAGGACAAGAAGAATTGCCTTTAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A828ZMX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.613

99.425

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.391

0.741
  recA Streptococcus pneumoniae D39

69.231

100

0.698
  recA Streptococcus pneumoniae R6

69.231

100

0.698
  recA Streptococcus pneumoniae TIGR4

69.231

100

0.698
  recA Streptococcus pneumoniae Rx1

69.231

100

0.698
  recA Streptococcus mitis SK321

71.131

96.552

0.687
  recA Streptococcus mitis NCTC 12261

70.833

96.552

0.684
  recA Streptococcus pyogenes NZ131

69.789

95.115

0.664
  recA Streptococcus mutans UA159

66.571

99.713

0.664
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.54

0.638
  recA Neisseria gonorrhoeae strain FA1090

61.471

97.701

0.601
  recA Neisseria gonorrhoeae MS11

61.471

97.701

0.601
  recA Neisseria gonorrhoeae MS11

61.471

97.701

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.563

0.595
  recA Helicobacter pylori strain NCTC11637

57.471

100

0.575
  recA Helicobacter pylori 26695

57.471

100

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.391

0.575
  recA Acinetobacter baumannii D1279779

61.61

92.816

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.816

0.572
  recA Vibrio cholerae strain A1552

61.61

92.816

0.572
  recA Acinetobacter baylyi ADP1

61.3

92.816

0.569
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.943

0.566
  recA Pseudomonas stutzeri DSM 10701

60.494

93.103

0.563
  recA Glaesserella parasuis strain SC1401

60.748

92.241

0.56

Multiple sequence alignment