Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DPR13_RS12545 Genome accession   NZ_CP030110
Coordinates   2500298..2501539 (-) Length   413 a.a.
NCBI ID   WP_002310441.1    Uniprot ID   -
Organism   Enterococcus faecium strain BM4105-RF     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2495298..2506539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR13_RS12530 (DPR13_12530) proC 2496283..2497089 (+) 807 WP_002310439.1 pyrroline-5-carboxylate reductase -
  DPR13_RS12535 (DPR13_12535) rny 2497168..2498724 (-) 1557 WP_002287336.1 ribonuclease Y -
  DPR13_RS12540 (DPR13_12540) recA 2499143..2500189 (-) 1047 WP_002310440.1 recombinase RecA Machinery gene
  DPR13_RS12545 (DPR13_12545) cinA 2500298..2501539 (-) 1242 WP_002310441.1 competence/damage-inducible protein A Machinery gene
  DPR13_RS12550 (DPR13_12550) pgsA 2501710..2502288 (-) 579 WP_002310442.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DPR13_RS12555 (DPR13_12555) - 2502496..2503419 (-) 924 WP_002310444.1 RodZ domain-containing protein -
  DPR13_RS12560 (DPR13_12560) - 2503787..2505073 (-) 1287 WP_002320446.1 pitrilysin family protein -
  DPR13_RS12565 (DPR13_12565) - 2505066..2506334 (-) 1269 WP_002310447.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45478.91 Da        Isoelectric Point: 4.7550

>NTDB_id=299332 DPR13_RS12545 WP_002310441.1 2500298..2501539(-) (cinA) [Enterococcus faecium strain BM4105-RF]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALAETRSELILLCGGLGPTEDDLTKEA
TAAHLGKSLIQNTEGYKKLLAYFETTHRKMTKNNLQQSQIIEGGVPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKENKQTVTAAESLTAGAFQAALGDIAGVSEVFPGGFVTYSLQTKAGFLEIDP
ELLAEYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDTLEGHPAGTVWIAISSKDGVVSEKYHFARDRAAIRYNTVM
QGFDLLRKQLLRK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=299332 DPR13_RS12545 WP_002310441.1 2500298..2501539(-) (cinA) [Enterococcus faecium strain BM4105-RF]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAGACCGTCGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTAGCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGGCCGACAGAAGATGATCTGACAAAAGAAGCA
ACTGCGGCTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGCATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCTCAAATCATCGAAGGTGGGGTTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCATATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCTTTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTGATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAACTAAAAGATCTAATCGAGACACAGATTAATCCAACGATCGCTCCTTATGCCA
AACCAAATGAAGTGACATTGCGTCTAACAGTAAAAACAAAGGATGTTCAGGCAGGAAATCAAGCTCTTTTAGCATTGGAA
GAAAAGATTCAAGAACGAGTAGGAGAATATTTTTATGGATATGGCGATGATAATTCGTTAGCAAAAGTCGTAGTGGAACT
GCTGAAAGAAAACAAGCAGACTGTAACAGCGGCGGAAAGCTTGACAGCCGGTGCCTTCCAAGCCGCATTGGGCGATATTG
CTGGTGTATCTGAAGTATTTCCAGGCGGCTTTGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAGAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACACATTAGAAGGTCACCCTGCAGGAACAGTATGGATCGCTA
TTTCATCTAAAGATGGCGTGGTTTCAGAAAAATATCATTTTGCCAGAGACCGTGCGGCTATCAGATATAATACGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAGAAAATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.429

100

0.523
  cinA Streptococcus pneumoniae TIGR4

51.19

100

0.521
  cinA Streptococcus pneumoniae R6

50.952

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.952

100

0.518
  cinA Streptococcus pneumoniae Rx1

50.952

100

0.518
  cinA Streptococcus pneumoniae D39

50.952

100

0.518
  cinA Streptococcus mutans UA159

51.325

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

47.816

99.758

0.477
  cinA Streptococcus suis isolate S10

41.546

100

0.416

Multiple sequence alignment