Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LPEG9_RS04625 | Genome accession | NZ_CP029546 |
| Coordinates | 851393..852454 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei strain EG9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 812641..862417 | 851393..852454 | within | 0 |
Gene organization within MGE regions
Location: 812641..862417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPEG9_RS04420 (LPEG9_04420) | - | 812641..813561 (-) | 921 | WP_096835977.1 | IS30 family transposase | - |
| LPEG9_RS04425 (LPEG9_04425) | - | 813672..814733 (+) | 1062 | Protein_786 | hypothetical protein | - |
| LPEG9_RS04430 (LPEG9_04430) | - | 814762..815187 (+) | 426 | WP_109990101.1 | DUF1617 family protein | - |
| LPEG9_RS04435 (LPEG9_04435) | - | 815190..815459 (+) | 270 | WP_109990102.1 | hypothetical protein | - |
| LPEG9_RS04440 (LPEG9_04440) | - | 815505..815798 (+) | 294 | WP_109990103.1 | hypothetical protein | - |
| LPEG9_RS04445 (LPEG9_04445) | - | 815788..816222 (+) | 435 | WP_109990104.1 | phage holin | - |
| LPEG9_RS04450 (LPEG9_04450) | - | 816222..816410 (+) | 189 | WP_012491267.1 | phage holin, LLH family | - |
| LPEG9_RS04455 (LPEG9_04455) | - | 816397..817371 (+) | 975 | WP_109990105.1 | peptidoglycan amidohydrolase family protein | - |
| LPEG9_RS04460 (LPEG9_04460) | - | 817892..819403 (+) | 1512 | WP_109990106.1 | glycosyltransferase | - |
| LPEG9_RS04465 (LPEG9_04465) | - | 819431..820990 (+) | 1560 | WP_003593829.1 | glycosyltransferase | - |
| LPEG9_RS04470 (LPEG9_04470) | - | 821087..821560 (+) | 474 | WP_003564137.1 | glutathione peroxidase | - |
| LPEG9_RS04475 (LPEG9_04475) | - | 821905..823110 (+) | 1206 | WP_003583932.1 | MalY/PatB family protein | - |
| LPEG9_RS04480 (LPEG9_04480) | - | 823244..824572 (-) | 1329 | WP_016387113.1 | metallophosphoesterase | - |
| LPEG9_RS04485 (LPEG9_04485) | - | 824762..825028 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| LPEG9_RS04490 (LPEG9_04490) | - | 825077..826420 (+) | 1344 | WP_003574245.1 | PFL family protein | - |
| LPEG9_RS04495 (LPEG9_04495) | - | 826530..827585 (+) | 1056 | WP_003593835.1 | competence protein CoiA | - |
| LPEG9_RS04500 (LPEG9_04500) | - | 827775..828410 (-) | 636 | WP_003564143.1 | DsbA family protein | - |
| LPEG9_RS04505 (LPEG9_04505) | - | 828480..829073 (-) | 594 | WP_003564144.1 | CYTH domain-containing protein | - |
| LPEG9_RS04510 (LPEG9_04510) | - | 829267..829938 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| LPEG9_RS04515 (LPEG9_04515) | - | 829940..830737 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| LPEG9_RS04520 (LPEG9_04520) | - | 830737..831639 (+) | 903 | WP_003564147.1 | RluA family pseudouridine synthase | - |
| LPEG9_RS04525 (LPEG9_04525) | - | 831748..832806 (-) | 1059 | WP_003569478.1 | FAD:protein FMN transferase | - |
| LPEG9_RS04530 (LPEG9_04530) | - | 832963..833598 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| LPEG9_RS04535 (LPEG9_04535) | - | 833620..834438 (-) | 819 | WP_003564150.1 | undecaprenyl-diphosphate phosphatase | - |
| LPEG9_RS04540 (LPEG9_04540) | - | 834657..835655 (+) | 999 | WP_003601683.1 | IS30 family transposase | - |
| LPEG9_RS04545 (LPEG9_04545) | - | 835760..836800 (-) | 1041 | WP_003564151.1 | lactonase family protein | - |
| LPEG9_RS04550 (LPEG9_04550) | - | 837072..837449 (+) | 378 | WP_003593849.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LPEG9_RS04555 (LPEG9_04555) | rpsN | 837562..837831 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LPEG9_RS04560 (LPEG9_04560) | - | 837959..838936 (-) | 978 | WP_032674946.1 | GMP reductase | - |
| LPEG9_RS04565 (LPEG9_04565) | - | 839176..840123 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| LPEG9_RS04570 (LPEG9_04570) | - | 840189..841031 (+) | 843 | WP_003569501.1 | methyltransferase domain-containing protein | - |
| LPEG9_RS04580 (LPEG9_04580) | trmL | 841286..841795 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LPEG9_RS04585 (LPEG9_04585) | - | 841922..842332 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| LPEG9_RS04590 (LPEG9_04590) | - | 842505..844826 (+) | 2322 | WP_016365284.1 | DNA translocase FtsK | - |
| LPEG9_RS04595 (LPEG9_04595) | yfmF | 844835..846097 (+) | 1263 | WP_109990107.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LPEG9_RS04600 (LPEG9_04600) | yfmH | 846094..847386 (+) | 1293 | WP_003661348.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LPEG9_RS04605 (LPEG9_04605) | ymfI | 847386..848114 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| LPEG9_RS04610 (LPEG9_04610) | - | 848201..849130 (+) | 930 | WP_016387107.1 | helix-turn-helix domain-containing protein | - |
| LPEG9_RS04615 (LPEG9_04615) | pgsA | 849127..849720 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LPEG9_RS04620 (LPEG9_04620) | cinA | 850095..851336 (+) | 1242 | WP_016387106.1 | competence/damage-inducible protein A | Machinery gene |
| LPEG9_RS04625 (LPEG9_04625) | recA | 851393..852454 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| LPEG9_RS04630 (LPEG9_04630) | rny | 852756..854327 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| LPEG9_RS04635 (LPEG9_04635) | - | 854421..855071 (-) | 651 | WP_003593868.1 | YigZ family protein | - |
| LPEG9_RS04640 (LPEG9_04640) | - | 855099..856361 (+) | 1263 | WP_109990476.1 | helicase-related protein | - |
| LPEG9_RS04645 (LPEG9_04645) | - | 856574..857035 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| LPEG9_RS04650 (LPEG9_04650) | hpf | 857159..857716 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LPEG9_RS04660 (LPEG9_04660) | secA | 858050..860413 (+) | 2364 | WP_003593872.1 | preprotein translocase subunit SecA | - |
| LPEG9_RS04665 (LPEG9_04665) | prfB | 860538..861654 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| LPEG9_RS04670 (LPEG9_04670) | ftsE | 861731..862417 (+) | 687 | WP_003564191.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=293401 LPEG9_RS04625 WP_003598111.1 851393..852454(+) (recA) [Lacticaseibacillus paracasei strain EG9]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=293401 LPEG9_RS04625 WP_003598111.1 851393..852454(+) (recA) [Lacticaseibacillus paracasei strain EG9]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.