Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BPUM_RS08060 Genome accession   NC_009848
Coordinates   1659949..1660989 (+) Length   346 a.a.
NCBI ID   WP_012010020.1    Uniprot ID   A8FDG3
Organism   Bacillus pumilus SAFR-032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1654949..1665989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS08035 (BPUM_1593) - 1655733..1655990 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  BPUM_RS08040 (BPUM_1594) - 1656122..1656913 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BPUM_RS08045 (BPUM_1595) - 1656937..1657848 (+) 912 WP_041815525.1 helix-turn-helix domain-containing protein -
  BPUM_RS08050 (BPUM_1596) pgsA 1657924..1658505 (+) 582 WP_012010018.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BPUM_RS08055 (BPUM_1597) cinA 1658522..1659772 (+) 1251 WP_012010019.1 competence/damage-inducible protein A Machinery gene
  BPUM_RS08060 (BPUM_1598) recA 1659949..1660989 (+) 1041 WP_012010020.1 recombinase RecA Machinery gene
  BPUM_RS08065 (BPUM_1599) rny 1661295..1662857 (+) 1563 WP_003211958.1 ribonuclease Y -
  BPUM_RS08070 (BPUM_1600) - 1662945..1663739 (+) 795 WP_012010021.1 TIGR00282 family metallophosphoesterase -
  BPUM_RS08075 (BPUM_1601) spoVS 1663941..1664201 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37734.90 Da        Isoelectric Point: 4.7737

>NTDB_id=29280 BPUM_RS08060 WP_012010020.1 1659949..1660989(+) (recA) [Bacillus pumilus SAFR-032]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKAPEDEEGQEELEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=29280 BPUM_RS08060 WP_012010020.1 1659949..1660989(+) (recA) [Bacillus pumilus SAFR-032]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTGGGAATAGGCGGAT
ATCCTCGCGGGCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCAGAGCATGCACTTGATCCAGTTTATGCTCAAAAACTAGGTGT
CAATATTGATGAGTTGTTACTTTCTCAGCCTGACACAGGAGAGCAAGCACTTGAAATTGCAGAAGCGCTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTACAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAGGGAAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCTTTCCGTATTGCAGAAGTAGATATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAGATCATTGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGATTCAAGAACAA
ATTAGAGAGCACTACGGTTTGGATACAAACGGAGTGAAAGCACCTGAAGATGAAGAAGGTCAAGAGGAATTGGAATTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FDG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.954

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.931

0.705
  recA Streptococcus pneumoniae Rx1

69.091

95.376

0.659
  recA Streptococcus pneumoniae D39

69.091

95.376

0.659
  recA Streptococcus mitis NCTC 12261

69.091

95.376

0.659
  recA Streptococcus pneumoniae R6

69.091

95.376

0.659
  recA Streptococcus pneumoniae TIGR4

69.091

95.376

0.659
  recA Streptococcus mitis SK321

68.788

95.376

0.656
  recA Streptococcus mutans UA159

68.693

95.087

0.653
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.376

0.633
  recA Neisseria gonorrhoeae strain FA1090

63.081

99.422

0.627
  recA Neisseria gonorrhoeae MS11

63.081

99.422

0.627
  recA Neisseria gonorrhoeae MS11

63.081

99.422

0.627
  recA Helicobacter pylori 26695

62.791

99.422

0.624
  recA Helicobacter pylori strain NCTC11637

62.791

99.422

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

98.555

0.616
  recA Acinetobacter baumannii D1279779

62.13

97.688

0.607
  recA Ralstonia pseudosolanacearum GMI1000

65.615

91.618

0.601
  recA Acinetobacter baylyi ADP1

60.882

98.266

0.598
  recA Glaesserella parasuis strain SC1401

62.614

95.087

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.775

0.595
  recA Vibrio cholerae strain A1552

64.174

92.775

0.595
  recA Pseudomonas stutzeri DSM 10701

61.446

95.954

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.353

0.561

Multiple sequence alignment